Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4890 307 1e-78 seq4261 136 4e-27 seq3105 136 4e-27 seq1938 132 5e-26 seq2993 125 7e-24 seq4811 113 4e-20 seq4260 111 2e-19 >seq4890 Length=10138 Score = 307 bits (340), Expect = 1e-78 Identities = 1193/1843 (65%), Gaps = 50/1843 (3%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| ||||||||||| |||||||| ||| | ||| ||||| ||||| |||| Sbjct 5648 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGT 5589 Query 148013 CATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATGA 148071 || || ||||||| |||| | | || |||||||| |||||| || Sbjct 5588 CAGCTTACTGATAGTCGGGT-CGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATAT 5530 Query 148072 ACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTC 148130 | |||||||||||||| | || || | || || || | ||| |||||||| ||||| Sbjct 5529 AAGCGCCACGGTCAGCCGACAGGTCCA-GAACAGCCTTCTGCTTGATCTCCCACACCGTC 5471 Query 148131 TTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGC 148190 |||||| | ||| | || ||| |||||| | | || |||||| ||||| | | Sbjct 5470 TTGTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACAGAGCCACCATCA 5411 Query 148191 GCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATC 148250 | ||||||||| || | ||| ||| | | | ||||||||| || || | ||| Sbjct 5410 TTCAGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5351 Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 ||||||| || || | | ||||| || || | ||| || || |||| |||| | Sbjct 5350 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5291 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || | || || | |||||||||||||||| ||||| || || | || || |||||| Sbjct 5290 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5231 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || |||||||||||||| || | |||| | || | | | || || || ||| Sbjct 5230 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCC 5171 Query 148431 CAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGG 148487 |||| ||| ||| | || ||||| ||| |||||||||| |||| | || || Sbjct 5170 CAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTA 5111 Query 148488 CTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-T 148546 || || || ||||| | ||| ||| || || ||| || | || || | Sbjct 5110 CTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGA 5052 Query 148547 CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA--GCAGCGCCGCC 148604 || ||| | || | |||| ||||||||| || | | |||| | || || || Sbjct 5051 CGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCA-CG-AGCT 4994 Query 148605 GACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCC 148663 | ||| ||| || || || || | | ||||| || || || ||||| ||||| Sbjct 4993 TGCGGGCTCTCGAAC-GCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 4935 Query 148664 CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGATAGTGGT 148722 | |||||||| || || |||||||| ||| || |||| | | ||||| | | Sbjct 4934 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAAT 4876 Query 148723 TGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTG-CGCA 148776 || |||||||| ||||| || |||||| | |||||| | || | | | | Sbjct 4875 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 4816 Query 148777 GCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGAT 148836 | || || | || || || || | ||| || || || | ||| || | | Sbjct 4815 TGTAGTCGAA--CACAC-CGTTTTCCAC-AAACATAGG--CAGCGCCACAGACGCCAAGT 4762 Query 148837 TGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGC 148896 ||||||| ||| |||||| || | ||||||| | || ||| ||| | |||||| Sbjct 4761 TGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGG 4702 Query 148897 ATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCA 148956 | |||| |||| ||||| || || ||||| ||| ||||||||||| |||| Sbjct 4701 AACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 4642 Query 148957 TGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCG 149013 || | || | || || || | ||| | || | || ||||| ||| | ||| | Sbjct 4641 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACC---ACAGCTGCTGAG 4585 Query 149014 CGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 || | | | | | || | || || |||| |||||| |||||| || ||| Sbjct 4584 CGTTGATTGTCTTACGCGCA-CGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAAC 4526 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | ||||| |||| |||| ||||| || | || || || | | |||| | Sbjct 4525 TCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 4466 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 || | || | ||| | |||||| || ||||| |||||||| |||||||| | | |||| Sbjct 4465 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 4406 Query 149193 C--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 | |||| ||||| || || ||| ||||| | || | ||| | || Sbjct 4405 CGGGCGCGGTGCAG--CTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGT 4348 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||||||||| | ||| | |||| || |||||||||||| |||||||||| Sbjct 4347 CGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGT 4288 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | || | ||| || ||| ||||||||| || | ||| || |||||| | | | || Sbjct 4287 CCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGC 4228 Query 149368 CGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427 |||| || || ||| ||| || || | ||||||| ||| ||||| | Sbjct 4227 CGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATAC 4168 Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 |||| | | || ||||| ||||| | || || ||| |||||||| || Sbjct 4167 CGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAG 4108 Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547 ||| || ||| | || || || || || ||| || ||| |||||||||| Sbjct 4107 AGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGT 4048 Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||| | || ||| ||||||| || || | ||||| ||| | |||||||| ||| | Sbjct 4047 TGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCA 3988 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 | || | ||||| |||||||||| || || |||| | ||| ||||||| Sbjct 3987 GTGCGGACTTGATGTCGCTCTTGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCG 3928 Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAGCCGTTTTCTAGTGTCTTGT 149724 | |||||| |||| ||| ||| | | | || ||||||| || || |||||| Sbjct 3927 GCCGCTCCACCACCTTG---CCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGA 3871 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||| ||||| | ||| || ||||||||| ||||| ||||| Sbjct 3870 AGCCGAAGTAGTCGTACTCGAAGTCGCGGTCGTGGATGATGGC 3828 >seq4261 Length=68810 Score = 136 bits (150), Expect = 4e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || | ||||||||||| || ||||||||||||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||||| | || | || ||| | ||||||||||| | |||| Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||||| || || |||||||||||||| Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 155 >seq3105 Length=35891 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || || ||| |||||||||||||||||| Sbjct 16595 GGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 16654 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| || |||||||| || || ||||| Sbjct 16655 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTT 16714 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||||||||||| |||| ||| ||||| || || || Sbjct 16715 GACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGT 16774 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 16775 CTTGACGAAAATCTGCAT 16792 >seq1938 Length=18534 Score = 132 bits (146), Expect = 5e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || ||||||||||| Sbjct 18 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 77 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | | || | || ||| | ||||||||||||| ||| | Sbjct 78 GTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAAT 137 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||||| || || ||||| |||||||| Sbjct 138 GGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 173 >seq2993 Length=38503 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || ||||| || ||||| Sbjct 7333 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTT 7392 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 7393 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 7452 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| |||| || || || || ||||||||| Sbjct 7453 GGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCATG 7489 >seq4811 Length=93528 Score = 113 bits (124), Expect = 4e-20 Identities = 497/768 (65%), Gaps = 19/768 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| |||||||| || ||||| | | || || ||| ||| Sbjct 48144 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCAT 48085 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACT-GTACGAGCAGTC 120472 | || || ||||| | |||| || || | | || | | ||| |||||| | Sbjct 48084 CCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTA-GAGCAGAC 48026 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGC-GCGTTCATGCCCAGCAACGCC 120531 |||| || || ||||||||||||| ||||||| | || | |||||| || | || | || Sbjct 48025 GGTCAGCCACGAACTCAATGTACTGGCACATG-AGGGCAGAGTTCATACCAATCAGCTCC 47967 Query 120532 ACCGGCAACGCCG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || ||| | |||||| | |||||| |||| || || | || | Sbjct 47966 ACAGGGAGCGAGTCACGC-ACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTC 47908 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650 | | | | | | |||| |||| || || || | ||| | ||||| || || Sbjct 47907 GTGTACACGGCTCTCTGGCAGCTTG-GT--GACCAGCTTGGAGTACAAAAGGCAGGCGAA 47851 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||||||||||| ||||||||| || || |||||||| || |||| |||||||| Sbjct 47850 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 47791 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTC 120770 || ||| | |||| | | || |||| | || |||||| ||||| | ||| || Sbjct 47790 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 47731 Query 120771 CACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG-TCGATCCACT 120829 ||| || || || | || |||||| | | | | | || | ||| ||||| Sbjct 47730 CACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATA-CACGCGGGTCGCACCACT 47672 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCA 120889 | | ||||| | ||||| || || || || || ||| | || ||| || Sbjct 47671 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 47612 Query 120890 TGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGT 120949 ||| |||| | | ||| || | | |||||||| ||| | |||| || Sbjct 47611 GGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGT 47552 Query 120950 GCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGCA 121006 | | | ||| || || | |||| | || ||| | | ||||| || | ||| Sbjct 47551 GAATGTTCTCAATG-GCGAT--CTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCTGCA 47495 Query 121007 CCGCCC-GCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAG 121065 | | |||| | | | | ||| || |||||||||| ||| ||| |||||| Sbjct 47494 CTTCGTTGCTGAAGTTCATGGCCAAG-TTCTCGTTCACGATACCGTCACTGGCTGCGAAG 47436 Query 121066 AACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTG 121113 || || |||||||||||||| ||||||||||||| ||||||||||||| Sbjct 47435 AAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTG 47388 >seq4260 Length=9660 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| |||| || |||| |||||| ||||||||||| Sbjct 9539 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCA 9598 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 9599 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG 9658 Query 133584 A 133584 | Sbjct 9659 A 9659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379630676120