Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4811 327 2e-83 seq4890 158 2e-32 seq2076 152 7e-31 seq3351 122 1e-21 seq4898 118 2e-20 >seq4811 Length=93528 Score = 327 bits (362), Expect = 2e-83 Identities = 442/601 (74%), Gaps = 16/601 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||| | || || ||||| ||||| || || ||||||||||| | | || || Sbjct 47244 CGAGCCGTTCCTCGTTGAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACA-CG 47302 Query 1455775 GA-TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | | ||| | |||||| | |||| ||||||||||||| ||||| || |||||| ||||| Sbjct 47303 AAGTGTGGCAGATGTACAAGAAAG-CCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGAC 47361 Query 1455834 CTCGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 || | |||| | || ||||| ||| | ||| ||||||| || |||||| Sbjct 47362 CTTGTGCACGACCTCAAGG---ACTGGAGCAAGCTCACGGACAACGAGCGACACTTCATC 47418 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 |||||||| |||||||| || ||| ||||| || || |||||| ||||||| ||||| Sbjct 47419 AAGCACGTGCTCGCCTTCTT-CGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCAT 47477 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||| | || || || || |||| ||||| |||| || || || ||||||||||| Sbjct 47478 GAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGC 47537 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||| || ||||| ||||| || |||||| || || || ||||| ||| |||||||| | Sbjct 47538 CATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGC 47597 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | ||||||||||||| ||| | || ||||| || || | || | || | ||| ||||| Sbjct 47598 GATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGC 47657 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 ||||||| | |||||| | || | | | || | || | ||||| || | Sbjct 47658 TCACTGGGCACTCAAGTGGTGCGAC-CCGCGTGTATCCTC-CTACCCGGAGCGCCT-GCT 47714 Query 1456191 GGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 |||||| || || || || |||||||| ||||||||| ||||||| ||||||||||||| Sbjct 47715 GGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCT 47774 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308 ||||||||||||||||||||||||| | |||| ||||| | |||||||| |||| Sbjct 47775 AAAGAAGCGCGGCCTCATGCCCGGTC-TGAGCTTCTCGAACGAGCTCATCAGTCGTGACG 47833 Query 1456309 A 1456309 | Sbjct 47834 A 47834 Score = 163 bits (180), Expect = 4e-34 Identities = 237/324 (73%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GACCGAC 1456510 ||||| ||||| ||||| || | ||| | | ||| |||| ||||| | | || | | Sbjct 47840 TGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCACCAAGCTGCCAGAGAGCC 47899 Query 1456511 GTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 ||| || | ||||||| ||| || || || | ||| ||| | |||||||| | || || Sbjct 47900 GTGTACACG-AGATCATTCGT-GACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTC 47957 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||| || |||| ||| || || |||||| | || |||||||||||||||||||| || Sbjct 47958 GCTCCCTGTGGAGCTGATTGGTATGAACTCTGCC-CTCATGTGCCAGTACATTGAGTTC- 48015 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || ||||| |||||| |||| || || | ||| ||||| | ||||| Sbjct 48016 GTGGCTGACCGTCTGCTCTACTCGCTTGG-TGTGTCCAAGATCTACCACGCTAAGAACCC 48074 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 || |||||||| ||||||| ||| | ||||||||||||||||||||| || || Sbjct 48075 TTTTGACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGT 48134 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGT 1456772 ||||||||| ||||||||||||| Sbjct 48135 GGGCGAGTACTCCAAGGCCGGCGT 48158 >seq4890 Length=10138 Score = 158 bits (174), Expect = 2e-32 Identities = 219/305 (72%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| |||||||||| |||| ||||| || || || || ||||| || ||| Sbjct 3993 ACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAACGCC 4052 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 |||||||| || || ||| || || || || || |||| ||| ||| || || || Sbjct 4053 GGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGACTCTATT 4112 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 |||||||| || ||||| || ||||| ||||| ||||| || ||| ||||| ||| Sbjct 4113 GAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGTATC 4172 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 ||| | | | | ||||| | |||||| | | |||| | ||||| |||||| Sbjct 4173 GGTAT--CAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGGCT 4230 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 || |||||| || | |||||| | || || |||||||||||||| ||||| || |||| Sbjct 4231 CCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACC 4290 Query 260181 AGTGC 260185 || || Sbjct 4291 AGGGC 4295 >seq2076 Length=94050 Score = 152 bits (168), Expect = 7e-31 Identities = 208/289 (72%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 724852 CGGTTGGCAAGCGCGGTCGCGGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTA 724911 |||||| |||| ||| ||| || |||||||| || ||||||||| ||| | Sbjct 75176 CGGTTGCCAAGTCCGGCAAGGGCAAGGGCAAGAAGCGAGTTGAGTCGTACTCGACCTACA 75117 Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||| || | | ||| | | | | | | Sbjct 75116 TCTACAAGGTGCTGCGTCAGGTGCACCCCGACACGGGT-----ATCAGCAAGCGCGGC-A 75063 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||||||||||| |||||||||| |||| ||||||| | | |||||||| Sbjct 75062 TGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATCGCCTCGGAGGCCGGCA 75003 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||| |||| | ||||||| ||| | || |||||||||||||| ||||||| Sbjct 75002 AGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAGATCCAGACTGCCGTGC 74943 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | | ||| || ||||| | ||||||||| || |||||||| Sbjct 74942 GTCTCATGCTCCCCGGTGAGCTGGCTAAGCACGCCGTGTCGGAGGGCAC 74894 >seq3351 Length=83448 Score = 122 bits (134), Expect = 1e-21 Identities = 189/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 724872 GGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAG 724931 ||| || |||||||| | | ||||||||| ||| |||||||||||||| ||| Sbjct 26611 GGCAAGGGCAAGAAGCGTGTCGAGTCGTACTCGACCTACATCTACAAGGTGCTGCGTCAG 26552 Query 724932 GTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTT 724991 ||||||||| || | | ||| | | | | ||||||||||||||||| || Sbjct 26551 GTGCACCCCGACACGGGT-----ATCAGCAAGCGTGGA-ATGTCGATCATGAACTCCTTC 26498 Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 |||||||||| |||| ||||||| | |||||||| ||| |||| | ||||||| Sbjct 26497 ATCAACGACATTTTCGAGCGCATCGCTTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAG 26438 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| | || || ||||||||||| || ||||| || || | | ||| || Sbjct 26437 AAGTCCACCCTGTCCAGCCGTGAGATCCAGACGGCTGTGCGTCTCATGCTCCCCGGTGAG 26378 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||||||||| || || ||||| Sbjct 26377 CTGGCTAAGCACGCCGTGTCAGAAGGCAC 26349 >seq4898 Length=18774 Score = 118 bits (130), Expect = 2e-20 Identities = 252/373 (68%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 || ||||||||||| || || ||||| | || ||| |||| | | | || |||||||| Sbjct 14757 AAACGCAGGATGGCGCAGCGACTCTGAATGGGCTCAATGATCTTGGTGGAGTTGTTGCAG 14816 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 |||| || || |||||||| | | ||||| || || || ||||| ||| Sbjct 14817 GCCAATGCGAATCGCGTCGTTGCCGAGAAGATCTCCATAGTACGTCGTAGAGCCTGCTGG 14876 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 || || | || | ||||||||||||| | |||| |||||||||||| || | || Sbjct 14877 GCTGCAGCTGTCATTGAGTCGGCCTCGTCCAATATGACGATCTTGTGGCGTCCAGGGGGA 14936 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 || ||| | | | ||| ||||| | |||| || ||| | ||||| Sbjct 14937 AGTGTCACCTTCTGCTGCGCGAACATCTTGATCTTACTGCGTACCGTGTCGATACCGCGA 14996 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCT-CGTCG-GCGGCCGCACCCAAGAGGACGC 333170 || || ||||| ||||| || ||||| |||| | ||| || | ||||| | || ||| Sbjct 14997 TCATCGGACGCATTGAGCTCCAGCACCGCCTGCTTCGTGCTG--GCACCGAGCAGCTCGC 15054 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGT 333230 ||||||| ||| |||||||| || || || || || || || || | || | ||| | Sbjct 15055 GCGCCAGACACAAAATGCTCGTTGTTTTACCAGTTCCTGGAGGGCCGGAGAGGATGAGAT 15114 Query 333231 TGGGCATGTTGCC 333243 | | |||||| || Sbjct 15115 TCGTCATGTTACC 15127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177154073627706