Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4261 107 2e-18 seq2993 107 2e-18 seq4260 104 2e-17 seq3105 100 3e-16 seq1938 91.5 1e-13 >seq4261 Length=68810 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || || || ||||| ||||||||||| | || | || |||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 35642 TCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 ||| |||||||||||| | |||| | | || ||| | ||||| |||| |||||| Sbjct 61 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGAT 119 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || ||||| || ||||| || |||||||| Sbjct 120 CGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 155 >seq2993 Length=38503 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | || || |||| || |||||||| || || || | Sbjct 7299 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7358 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | | |||||||||| ||| || ||||| | | ||| Sbjct 7359 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 7417 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| || ||||| || | |||||| || || |||||||| || |||||| Sbjct 7418 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7477 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 7478 AAGATCTGCAT 7488 >seq4260 Length=9660 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||| ||||| | | || ||||| || | ||| |||||| || |||||||| ||| Sbjct 9506 TTTCCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCG 9565 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 || || || |||| ||||||||||| || || || ||||| ||||||||||| | Sbjct 9566 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGC 9625 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 || | || ||||||||| |||||||||||| Sbjct 9626 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTT 9657 >seq3105 Length=35891 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| || | | Sbjct 16566 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 16625 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 16626 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 16685 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCAC 35688 | | |||||||||| || || ||||| | | ||| || | |||| || ||||| Sbjct 16686 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACA-TTGTCAATGCTGTCCGACGGCTCCAC 16744 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | |||||| || || ||||| | || || || || ||||||||| Sbjct 16745 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 16793 >seq1938 Length=18534 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || ||| || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 6 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 65 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 || || ||||||||| ||||| ||||||| |||| | | || ||| || |||| Sbjct 66 AATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCA 124 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || || || || ||||| || ||||| || |||||||| Sbjct 125 CGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450755209290040