Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3105 152 5e-32 seq1938 129 6e-25 seq4260 118 1e-21 seq4261 116 4e-21 seq2993 113 5e-20 seq4890 98.7 1e-15 >seq3105 Length=35891 Score = 152 bits (168), Expect = 5e-32 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||| || || | ||| Sbjct 16575 AGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGT--CCGACAGAGTGC 16632 Query 134556 G--AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| |||||||| ||||| || || |||| ||||||||| || ||||| || || | Sbjct 16633 GGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCT 16692 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGA 134672 | || || |||||||| || ||||| || ||||| |||| |||| ||||||||||| Sbjct 16693 CCTTGTCCTGAATTTTCTGCTTGACATTGT-CAATGCTGTCCGACGGCTCCACGTCGAGC 16751 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| || || || | || || |||||||| |||||||| Sbjct 16752 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 16795 >seq1938 Length=18534 Score = 129 bits (142), Expect = 6e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 |||| | |||| || ||| |||||||| ||||| || || |||| ||||||||| || Sbjct 1 TCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCA 60 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 ||||| |||||||| || || ||||| || || || || ||| | | ||| |||| Sbjct 61 GGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC 120 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||||||||| |||||||| || ||||| || || || ||||| || ||||| || Sbjct 121 TCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 176 >seq4260 Length=9660 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| || || || ||||| || |||||||||||| Sbjct 9506 TTTCCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCG 9565 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||| Sbjct 9566 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGC 9625 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 || |||||||| || || || || ||||| ||||| Sbjct 9626 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGAC 9660 >seq4261 Length=68810 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| || || |||||||||||||| || ||||| |||||||| || Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || ||||| ||||| ||| | | ||| || | |||||||| || || || Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || ||||| || || || |||||||| ||||| ||| Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTTG 159 >seq2993 Length=38503 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 7299 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7358 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| || || || || || || ||||| || ||||| || Sbjct 7359 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7418 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||| |||| ||||||||||| || ||||| || || || || || || || Sbjct 7419 -CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7477 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 7478 AAGATCTGCAT 7488 >seq4890 Length=10138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 337/520 (65%), Gaps = 9/520 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | |||| || ||| | ||||| ||| ||||| | |||| || Sbjct 3930 CAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCACTG 3989 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| || |||||||| | || || | || | Sbjct 3990 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 4049 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| | || ||||| ||||| || ||||| | | | |||| || ||| Sbjct 4050 GCCGGCACGC-CACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGACTC 4108 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| |||| || | |||||| ||| || |||| | ||||| Sbjct 4109 TATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGG 4168 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||| | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 4169 TATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGG 4228 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| | ||||||||||| ||||| || || ||| || |||| || Sbjct 4229 CTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGA 4288 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||| ||| | || ||||| ||||||||||||||||| || Sbjct 4289 CCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGA 4348 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCG--CGC 8037 | | | || | || |||||||| ||| ||| || | ||| ||| ||| Sbjct 4349 CGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA--GCTGCACCGCGCCCGC 4406 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 || | || | || |||||||||| ||||| || |||| Sbjct 4407 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGA 4446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505355359008760