Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4811 111 5e-19 seq4890 98.7 3e-15 >seq4811 Length=93528 Score = 111 bits (122), Expect = 5e-19 Identities = 309/455 (68%), Gaps = 23/455 (5%) Strand=Plus/Plus Query 443433 GCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCT---AC 443489 |||||||| ||| | || ||||||||||| ||||| ||| | | ||| || Sbjct 47431 GCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAAC 47490 Query 443490 GAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAAC 443549 ||| || ||| ||||||| || | |||||| | ||||| ||| || |||||| Sbjct 47491 GAAGTGCAGGTGC---CCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAAC 47547 Query 443550 ATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAAC 443607 |||||| | ||||||||| ||| | | ||| ||||| || || || || | ||| | Sbjct 47548 ATTCACTCGGAGGTCTAC--TCACT-GCTCATTGACACGTACATC--AAGGACG-CGATC 47601 Query 443608 -AGC-GGTCCATCTTCT-CAT--CGTTCATGACCACGCCAGGCATCACTGAAAAGACTCG 443662 || || |||||| || | | | || | ||||| || | |||| | ||| ||| Sbjct 47602 GAGAAGGACCATCTCCTGCGTGCCATTGA-GACCATCCCTTGTGTCACGAAGAAGGCTCA 47660 Query 443663 CTGGGCAAAACAGTGGCTCGAAC-GAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTT 443721 ||||||| ||||| ||| | | | ||| | || | ||||| || | |||| Sbjct 47661 CTGGGCACTCAAGTGGTGCGACCCGCGTGTATC-CTCCTACCCGGAGCGCCTGCTGGCTT 47719 Query 443722 TTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAA 443781 | |||| || ||||| | || || ||| |||| ||||||||| ||| | || Sbjct 47720 TCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT-CTTTCTGCTCCATCTTTTGGCTAAAG 47778 Query 443782 AAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGT 443841 ||||| || || |||| |||||||| ||| ||||| || |||||||| |||||||| Sbjct 47779 AAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGC 47838 Query 443842 TTGCATTGCGACTTCGCCTGTCTTCTCTACACCAA 443876 |||| ||||||||||| ||| | ||| |||| Sbjct 47839 ATGCACACGGACTTCGCCTGCCTTTTGTACTCCAA 47873 >seq4890 Length=10138 Score = 98.7 bits (108), Expect = 3e-15 Identities = 353/539 (65%), Gaps = 10/539 (2%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| || ||| | |||||||| ||| || ||||||||| || || || || || Sbjct 4238 CGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGG 4297 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 || || ||| || ||||| | |||||| |||||||||||||||||||| || || Sbjct 4298 AGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGAC-GTGTTCG 4356 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACAT-CTAC 255148 ||| | ||| | || ||| | ||| || |||||||||| | | Sbjct 4357 AGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTT 4416 Query 255149 AC-CGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAG 255207 || |||||| ||||| ||||| || ||| | ||||| | | | ||||| Sbjct 4417 ACGCGCTGT-GGGTGC-CTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAG 4474 Query 255208 CCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAA 255267 | | ||||||||| | | || ||||| ||| | ||||| || ||||||||| Sbjct 4475 TTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGC 4534 Query 255268 ACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGA 255326 |||||| |||||||| | || || | |||| | ||| | ||| || || Sbjct 4535 TCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAA-TCAACGCTCAGCAGC 4593 Query 255327 TCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAG 255386 | ||| | | || | | ||| | || || ||| |||| ||| | | |||| | Sbjct 4594 TGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTACAAGG 4653 Query 255387 AC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTG 255445 || || ||| |||| ||||||||| | || |||||||| || | ||| | Sbjct 4654 ACGCAGCTAACCGCA-AGTCGAACCAGCAGAACTTGGGTACGATCCGTTCCAGCAACTTA 4712 Query 255446 TGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 ||| ||| | | | | |||||||| | | |||||||| || |||||||||||||| Sbjct 4713 TGCTGCGAAGTCATGGAGTACACGTCACCCGATGAGGTGGCAGTGTGCAACTTGGCGTC 4771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588197351668785