Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4890 172 7e-38 seq4811 114 2e-20 seq6376 89.7 6e-13 seq2980 89.7 6e-13 >seq4890 Length=10138 Score = 172 bits (190), Expect = 7e-38 Identities = 678/1047 (65%), Gaps = 31/1047 (3%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 4956 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4897 Query 111111 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| |||| |||||| |||| ||| ||||| ||| || || || | | | Sbjct 4896 CC-TCTGCAACAGGATAATAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACC 4838 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 111228 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 4837 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 4785 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 4784 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 4725 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | ||| ||||||||| |||| ||||| ||||| |||| ||||| ||| Sbjct 4724 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTT 4668 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 4667 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 4608 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCTCCGCCTCG 111463 ||||| || ||| | || | || | || | | || ||||| ||| |||| Sbjct 4607 GATAGCGAACC--ACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCG 4550 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT 111522 |||||| || || ||||||||||| || ||| | || ||| | ||||| || || | Sbjct 4549 TACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGCTTC 4491 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||| | ||| |||| || | ||||||||| || || || Sbjct 4490 GTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGG 4431 Query 111583 AATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | |||||| | |||| | || | | | | || | || | ||| ||||| | Sbjct 4430 CACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCTTAC 4372 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | || |||||||| | | || |||||||| ||||| | |||| |||| || | Sbjct 4371 GCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGC 4312 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || || || | || | |||||||| || ||| ||||||| || || | || Sbjct 4311 CCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACA 4252 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 111817 | || ||||| || | || || || || || || || || | ||| |||| | Sbjct 4251 TGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGG 4193 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || || || || ||||| || ||||| || ||||| || || | | | Sbjct 4192 ATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTT 4133 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | || || || | || ||||| |||| | || | ||||| ||| ||| Sbjct 4132 AGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGAC 4073 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||| || | ||| || || || |||||||| || || || ||||| |||| | || | Sbjct 4072 AACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTT 4014 Query 111998 -TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || ||||| ||||| ||||||| | || | ||||| | ||||||||| | Sbjct 4013 CTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCTAA 3954 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 || || |||| | ||| | ||| || Sbjct 3953 CGCTACACGCAGAATCATTTGCTGCGG 3927 >seq4811 Length=93528 Score = 114 bits (126), Expect = 2e-20 Identities = 378/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 48143 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 48084 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 48083 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 48024 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACA 122549 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 48023 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 47964 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 47963 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 47905 Query 122610 GATA-GTTTCGGTAGTGGGTCTATTAC--GCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 | | | || | | | | | || || | | || || || ||| || || Sbjct 47904 TACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGG--CA-GGCGAAGTC 47848 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 | ||| | ||||| || || || || || || ||||||| ||||| |||||||| Sbjct 47847 CGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAG 47788 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || |||||||| | |||| | || | |||||| || || ||||||||||| || ||||| Sbjct 47787 GCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCAC 47728 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCA 122845 | || || || | ||||| || | | ||||| || || | || |||| || | Sbjct 47727 AGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACTTGA 47669 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 |||||| | ||||||||| | ||| || | || | ||||| | | || | Sbjct 47668 GTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGT 47609 Query 122906 TCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 122939 ||| || |||| | ||||| ||||| ||||||| Sbjct 47608 CCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 47575 >seq6376 Length=24334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 236/358 (66%), Gaps = 12/358 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| |||||||| || | || |||||||| ||||| || | | |||| ||||| Sbjct 13245 AACCCGTTCCGATACCGTCACTGCCGTTCACGAGCACCATGGGGATAATTGGGATGTACC 13304 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGG--ATCGGGTCATCCCG 181741 | || || || ||||| | || || || | || || || || |||| | ||| Sbjct 13305 ATTCCGGCTCGATGGACTGGCCGTCTTCATTCAGATACTTCAGACAATCG--TTGTCCAA 13362 Query 181742 AGGATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 |||||| |||| ||||| || || || ||||| ||||| | | | Sbjct 13363 AGGATCGTAGATACGGCGAGTAAGCTGCTCTAGGTTGGTGAAAATATAACGAGCACTGGC 13422 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 | ||||||||||||||| ||||||||||| || |||||| || || |||| || Sbjct 13423 CGAGTCTTTACCACCCATCAGACGCGTACCGAACTGACCAATCGGGGACAGTAGGTGGAT 13482 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACT-- 181919 |||||| || |||| | |||| || ||||| | || | | ||| Sbjct 13483 GTTGTTGCTGCCAACGAAGTCCTGCGCCATATTCACGAT----ACAGCCCTGTAGACTTT 13538 Query 181920 --TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTT 181975 |||||||| ||||| || || | || | || || | ||||||||||||||||| Sbjct 13539 GCTCACCGTGATGGTAGGCAGAGTGCTCAGACACGTAGCCAGCCAACTGTGCCACCTT 13596 >seq2980 Length=80372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 ||||||||| |||| || || || ||||| | |||||| || || ||||| ||||| Sbjct 15544 AAGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACC 15603 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| || || || |||||||| | || || || || || || | ||||| |||||||| Sbjct 15604 GTACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACC 15663 Query 182780 CTCCGTGACAAT 182791 |||||| | ||| Sbjct 15664 CTCCGTCAAAAT 15675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627978515224800