Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4890 242 5e-59 seq4811 167 3e-36 seq2980 95.1 1e-14 >seq4890 Length=10138 Score = 242 bits (268), Expect = 5e-59 Identities = 1087/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 5642 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 5583 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 117955 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 5582 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 5528 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || || |||| || || | ||| ||||| |||||| |||||||| ||| | Sbjct 5527 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 5469 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| | ||||| |||||| || || ||| || || || | || ||||| | || Sbjct 5468 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACAGAGCCACCATCATT 5409 Query 118076 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 5408 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 5351 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 5350 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 5291 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 5290 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 5231 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGAGCG 118310 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 5230 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 5174 Query 118311 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 118362 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 5173 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 5119 Query 118363 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 118420 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 5118 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 5062 Query 118421 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | | | || ||| | ||| || || || || || || ||| |||| | Sbjct 5061 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 5002 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 5001 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 4944 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA-CGG 118596 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 4943 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 4885 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 ||||| |||| ||||| ||| | || || || |||| ||||| | |||| Sbjct 4884 GATAATAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 4825 Query 118657 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 4824 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 4772 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 ||||||| || ||||| | |||||| |||||||| || | ||| ||| Sbjct 4771 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 4712 Query 118776 AAGTTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| |||| || || |||||||||| || || ||||| |||| || Sbjct 4711 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCG 4655 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 4654 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 4596 Query 118893 ACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAGA 118950 || | || | | | || | | || | | || || | |||||||||| || | Sbjct 4595 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 4537 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | ||||||||||| || ||| | ||| | || || || || | | || ||||| | Sbjct 4536 GAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 4477 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 4476 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 4417 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 4416 AAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAAC 4358 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGA 119186 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 4357 TCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCT 4298 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| ||||| | || ||| ||||||| ||||| | ||| || || || || Sbjct 4297 CCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCG 4238 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | || ||| || || || || || ||| |||| | || | ||| || Sbjct 4237 TTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTG 4178 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 4177 ATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATG 4118 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || |||||| ||| | || | ||||| || |||| ||||| | || Sbjct 4117 CCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGC 4058 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 || || |||||||||||||| || || ||||| |||| | || | || ||||| || Sbjct 4057 GTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTC 3999 Query 119486 GTAGGTCTCCA 119496 ||| ||||||| Sbjct 3998 GTACGTCTCCA 3988 >seq4811 Length=93528 Score = 167 bits (184), Expect = 3e-36 Identities = 393/581 (68%), Gaps = 18/581 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 48143 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 48084 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | || | || | ||| |||| | | ||| ||||| Sbjct 48083 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 48024 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | ||||||||||| || || | ||| Sbjct 48023 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 47964 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | ||| | | |||||| ||||||| || || | ||| |||| Sbjct 47963 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 47905 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-----GGCAAA 130020 | | ||| || ||| | | | | || |||| |||| | | ||| || Sbjct 47904 TACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGCAGGCGAA 47851 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 ||| ||| | ||||||||||| |||||| || |||||||||| |||||| ||||| Sbjct 47850 GTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCAT 47791 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | ||| || || | || || ||||| ||||||||||| || || Sbjct 47790 GAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTC 47731 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACT 130199 |||| ||||| || | || ||||| | ||||| | || | || |||||| Sbjct 47730 CACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACT 47672 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 130259 | | ||||| || ||||| ||| || ||| |||| ||||| || || | ||| | Sbjct 47671 TGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGAT 47612 Query 130260 CCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 | ||| || ||| | || ||||||||| | || ||||| Sbjct 47611 GGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 47572 >seq2980 Length=80372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 15560 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 15619 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 180046 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 15620 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 15671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618382532512280