Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq759 120 9e-22 seq3105 116 1e-20 seq5411 93.3 1e-13 seq4261 89.7 2e-12 seq5222 86.0 2e-11 >seq759 Length=8669 Score = 120 bits (132), Expect = 9e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 130719 TCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCT 130778 |||||||| |||| | ||| || |||||||| ||||| || ||||| || || || || Sbjct 865 TCATCATGACCAGCAAGCATCCCACCAAGCATGACAAAGTCTGCTCCAGCCCCGAACGCC 924 Query 130779 TTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCA 130838 || |||| || || ||| || | || || || |||| || || || || || | || Sbjct 925 TTAGCAACGTCACCAGGACATGTGCAGCCTCCGTCAGAGATCACGTGGCCGTTGAGACCG 984 Query 130839 TGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACT 130898 || || |||||||||||||| | |||||| | || ||||| || ||||||||| | Sbjct 985 TGAGCGGCATCAGCACACTCCAGCACAGCAGACAACTGCGGATAACCCACTCCAGTTTGT 1044 Query 130899 TTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCC 130954 || | || || || |||| |||||||| || || | || | || || ||||| Sbjct 1045 TTACGAGTGGTGCACACAGAGCCTGGACCGATGCCGACCTTGATGATGTCGGCTCC 1100 >seq3105 Length=35891 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || || Sbjct 16565 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 16624 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 16625 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 16684 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 16685 GATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 16744 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| || || || || || || |||||||||||| Sbjct 16745 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 16793 >seq5411 Length=8896 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 8896 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 8837 Query 235950 CCCAGCATCTCCAT 235963 ||| || ||||||| Sbjct 8836 CCCTGCTTCTCCAT 8823 >seq4261 Length=68810 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642 || || || || || ||||| ||||| | ||| ||||| ||||| || || ||||| || Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 140643 TCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 ||||| || ||| |||| || || || ||||| || || || || || || || || | Sbjct 61 TCCTGGATCTTTTGCTTG-ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGAT 119 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| | || || || ||||||||||| Sbjct 120 CGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 155 >seq5222 Length=5550 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| ||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 5302 GTGGGATTTAAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 5361 Query 74548 TCGGGCA 74554 ||||||| Sbjct 5362 TCGGGCA 5368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515122131075839