Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4890 241 1e-58 seq2980 118 1e-21 seq6376 100 3e-16 seq5000 95.1 1e-14 >seq4890 Length=10138 Score = 241 bits (266), Expect = 1e-58 Identities = 340/472 (72%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| || |||| ||| ||||||||||| || || || |||||| Sbjct 3990 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 4049 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| || ||||| |||| ||| |||||||||| Sbjct 4050 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGTTTCCTATTGGCTATGCAGGATGACTCT 4109 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| || || ||| | || ||| ||||| || ||| |||| ||| Sbjct 4110 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 4169 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGA---ACGGCACACCAATCAAGGGGACGAA 53478 ||||||||| ||| | ||| |||| || | || || || ||| || ||||| Sbjct 4170 ATCGGTATCAGTATGCAC-AACATCCGCGCCACTAACAGCT-AC--ATCCGCGGCACGAA 4225 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || || | || ||| | || || || ||| ||||||| || || || Sbjct 4226 CGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 4285 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 ||||||| || || ||||||||||| |||||||| |||||| | |||||||||||||| Sbjct 4286 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 4345 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | ||||| || || |||||| ||| || ||| | || | ||| ||| Sbjct 4346 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCG 4405 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || |||||| | || || ||||||||| | | |||||| Sbjct 4406 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAG 4457 Score = 172 bits (190), Expect = 6e-38 Identities = 535/814 (66%), Gaps = 37/814 (5%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||| |||||||||| ||||| || || || || ||| |||||| Sbjct 4845 ACGCGCAACCTCAACAAGGTCATCGACGTCAATTATTATCCTGTTGCAGAGGCTCGCAAG 4904 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || || || ||||| | || || || ||||| |||| || ||||| Sbjct 4905 TCCAACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATC 4964 Query 55253 ATGCTCGGATTGCCC-TTCGA---CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTT 55308 | | | | | | | ||||| | || || ||||| ||| | ||| || ||||||| Sbjct 4965 CTCAT-GAACTACGCGTTCGAGAGCCCGCAA---GCTCGTGAATTGAACAAGAACATCTT 5020 Query 55309 C-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGA 55367 | || || ||||||||||| || | ||| |||| | | || | | ||| Sbjct 5021 CGAGACG-ATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCACGGAATTGGGTC 5079 Query 55368 CCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGG 55427 | ||||||||||||| | || || || ||||| | |||||||||| | |||| Sbjct 5080 CTTACGAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGG 5139 Query 55428 GCAAGTCTGACCC-CATGT-----TTG--ACAAGT------TGAAGCATGACATTCACTT 55473 || ||| ||| ||| | ||| || | | || ||||| | || | Sbjct 5140 GC--GTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGT-CATTA 5196 Query 55474 GTGG-GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 || || || ||||| ||||| || || || ||||| || || || |||||||||| Sbjct 5197 AACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGA 5256 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||||| |||||| ||||||| ||| || || Sbjct 5257 TCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTGT 5316 Query 55593 TAGCAGGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCA 55649 | || |||||||| || |||| |||||| | || | ||||| || || || Sbjct 5317 TGGCTGGTGAGTT---CACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCG 5373 Query 55650 ACAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATC 55709 || |||| ||| | | | | ||| || | || || || || ||||| Sbjct 5374 GCATTTGGACGCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCTGTGCAGAAGG 5433 Query 55710 T---GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | ||| ||||| | | ||||||| ||| ||||||||||||||| |||| Sbjct 5434 TCAAGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 5493 Query 55767 AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGA 55826 || | | | ||| || ||||| ||||| || || ||| |||| ||||| ||| Sbjct 5494 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 5553 Query 55827 ACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGA 55886 ||||| ||| | | || | | ||| ||| || ||||||||||||| |||| Sbjct 5554 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 5613 Query 55887 AGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||||||||||||||| || |||||||| |||| Sbjct 5614 AGAAGGGACTCAAGACCGGCATGTACTACATGCG 5647 >seq2980 Length=80372 Score = 118 bits (130), Expect = 1e-21 Identities = 190/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| ||||| | || || || ||||| |||||| ||| || || ||||| || Sbjct 14620 CGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTG 14679 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || ||||| |||| |||||||| | ||| |||| || || Sbjct 14680 ACCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGAC 14739 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| || | ||||| ||||||||||| || || ||||| | ||| || Sbjct 14740 AATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACC 14799 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| |||||||||| || |||| || || || | ||| ||| | | || Sbjct 14800 AGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAAC 14859 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || ||| | ||| || ||||| Sbjct 14860 CTTCCGCTGCGAGATTTTGAGACCATCGACCAC 14892 Score = 102 bits (112), Expect = 9e-17 Identities = 147/204 (72%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 14621 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 14680 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || || |||||| |||| ||||| |||| || |||| ||||||| Sbjct 14681 CCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGACA 14740 Query 117425 ATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGT 117479 ||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 14741 ATCGTCGAGTGTAACGAGGCT----TCTCCGTGGTGATAAGCTGTGTGCTCACTGCA-GT 14795 Query 117480 AGCCCGCCAGCTGAGCCACCTTCA 117503 | || ||||||||||||||||||| Sbjct 14796 AACCAGCCAGCTGAGCCACCTTCA 14819 >seq6376 Length=24334 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 117297 CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTAC 117356 ||||| |||||||| ||||||| || || | || || ||||| |||||||||| Sbjct 13392 CTAGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTAC 13451 Query 117357 CGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 |||| || ||| |||| || |||| | ||||||| ||| || |||| || |||| Sbjct 13452 CGAACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCA 13511 Query 117417 AGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || || || || || || || |||||| || || || || | ||||| | || Sbjct 13512 TATTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACA 13571 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||| |||| ||| |||||||| Sbjct 13572 CGTAGCCAGCCAACTGTGCCACCTT 13596 >seq5000 Length=10565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/369 (67%), Gaps = 17/369 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | || || ||| || ||| ||| ||||||||| || Sbjct 5101 CGCGAGCTCTACAAACTCACGCACACTATGACACTCTCCAGTGGCAACCACGAAATCCTC 5042 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 |||| | ||||| | ||| ||||||| || |||||||| ||||| ||||| Sbjct 5041 GGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCCACGTAGTCTCGAGCGTGGCCCCA 4982 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG-TTCC------ 124653 |||||||| ||| || ||||| || | | | ||| || ||| | |||| Sbjct 4981 GTCGCGCTGGGCGTCGAGGTTGCCTA--TAAACAGGC--AGC--TCTCGATTCCAGCGTG 4928 Query 124654 ACTCCG--CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGA 124711 | | || ||| | | || || || ||||| ||||| | |||||||| | Sbjct 4927 AATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAGTTGGTCCGCGTCGAGGACT 4868 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| || || || |||| || || | ||||| | | || Sbjct 4867 CTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCATAAGCTTCGCGAT-GGTTAA 4809 Query 124772 CGTCA-TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 | || ||||||| |||| |||| | ||| |||||||| || || | |||||| | Sbjct 4808 CTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGTG 4749 Query 124831 TGTTTTCAT 124839 |||| |||| Sbjct 4748 TGTTCTCAT 4740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169397717400