Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4890 295 8e-75 seq3105 163 3e-35 seq4811 143 3e-29 seq2993 127 2e-24 seq1938 122 1e-22 seq2980 113 5e-20 seq4260 93.3 5e-14 >seq4890 Length=10138 Score = 295 bits (326), Expect = 8e-75 Identities = 1064/1645 (65%), Gaps = 46/1645 (3%) Strand=Plus/Minus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| ||||||||||| |||||||| ||||||||||| |||| | |||||| || | Sbjct 5647 CGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTC 5588 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 ||||| | || |||| | ||| |||||||| |||||| ||| ||||| || Sbjct 5587 AGCTTACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAA 5528 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || ||||| || |||| || || | || | ||| || || ||||| || || Sbjct 5527 GCGCCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTG 5468 Query 80221 TACACCTTACGAAGCTCCTCTGGAATGTCCA-GA--TTTTGCACACTGCCACCGTCCTTT 80277 ||| || || || || ||||||||| || || |||||| |||||| || || Sbjct 5467 TACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACAGAGCCACCATCATTC 5408 Query 80278 ACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGG 80337 | ||| ||||| | ||| | |||||| | || |||| | || || |||| || Sbjct 5407 AGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGA 5348 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | |||||||| || ||||| || || | ||||| |||| ||| | ||| Sbjct 5347 TACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTG 5288 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 |||||||| | | ||||||||| || ||||||||||||||| || |||||||| || Sbjct 5287 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 5228 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAA 80517 | |||| ||| || || || || ||||| || ||| || || | | | ||| Sbjct 5227 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAG 5168 Query 80518 AAATCAACCCCA----ACGCTGTGA--CCCCACATGTCGTGCTGCAAGATGCCCTCCGAC 80571 || |||| | | ||||| |||||||||||| ||| ||||| |||| Sbjct 5167 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 5108 Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTTGGCCAGCTC---ACAC 80625 |||||||| ||| |||||||||||| || ||| |||| |||| | ||| || Sbjct 5107 GCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCG---TGGCAATCTCCATCGAC 5051 Query 80626 GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCC 80685 | |||||| ||| || || || ||| |||| | |||||||| | || || Sbjct 5050 GTCTCCAT---GGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCT 4994 Query 80686 TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCG 80745 || ||| ||||||| || ||| | |||||| | || ||||| ||||| ||||| Sbjct 4993 TGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCA 4934 Query 80746 ATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 || | || || || |||||| |||| || | || ||||| | || || ||| | || Sbjct 4933 ATACCAATGGGACGATGGCGCATGTTGGACTTGC-GAGCCTCTGCAACAGGATAATAATT 4875 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 |||||||| ||| |||||||| || | ||| || |||| ||| ||| Sbjct 4874 GACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTT 4815 Query 80865 AAAGTCGAATTGGTTCCCCTT--CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 ||||||| || || |||||| || || || ||||||| |||||| Sbjct 4814 GTAGTCGAA--CACACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCAC 4757 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || |||||||| || | || |||| | || ||| ||| || || || Sbjct 4756 ACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGG 4697 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||||| ||| | |||||| |||||| ||| |||||||||||| |||| | Sbjct 4696 ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAG 4637 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 || || ||||| | ||| | | ||||| ||| ||| | || | || |||| Sbjct 4636 GGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT 4577 Query 81103 ACCTTGCG-GAATTTGCCTTCGGCCACATACTTGGCGTA---AGCTTCGTCGAACT--TG 81156 ||| || | | | ||||| | | ||||| | || |||| || |||| | Sbjct 4576 GTCTTACGCGCACGT-CCTTCCTTCTCGTACTTTTCATACAGAGCT---TCAAACTCATC 4521 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 || || | || || | || ||||| || || | || ||| | | Sbjct 4520 GCCCCAGCA--CTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCA 4463 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | | ||| || ||||||||| ||||| | ||| || ||| |||| ||||||| Sbjct 4462 TTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGG 4403 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| | ||||| ||| ||||| |||| || || || || | | ||| || Sbjct 4402 GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCG 4343 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACG 81393 ||||| ||||||| || | |||| ||| |||||||| || || ||||||| || Sbjct 4342 TGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACA 4283 Query 81394 TAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTC 81453 || || || || ||||||| ||||||||||| ||||| || || | || |||||| Sbjct 4282 TAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTC 4223 Query 81454 GTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCAC 81511 || || ||| | | | ||||||| | ||| || | |||||| || | Sbjct 4222 GTGCCGCGGAT--GTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGC 4165 Query 81512 CTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTAT 81571 | | ||| || || || || || | || | ||| || ||||| ||||| || | Sbjct 4164 CCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGT 4105 Query 81572 CTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGA 81631 | | | ||| | | | |||||| |||| |||||| | | | |||||| |||| Sbjct 4104 CATCCTGCATAGCCAATAGGAAACAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGA 4045 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAA 81656 | || || ||||| ||||| |||| Sbjct 4044 AGAGAGTAGGGGTGGCGTGCGTGAA 4020 >seq3105 Length=35891 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| |||||||| || || || || || ||| | Sbjct 16793 AATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 16734 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||||| ||| | ||| ||||||||||||||||||||||| || || ||||| Sbjct 16733 GGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGACCA 16674 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 16673 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTACAA 16614 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || ||||||| || ||||| Sbjct 16613 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 16566 >seq4811 Length=93528 Score = 143 bits (158), Expect = 3e-29 Identities = 369/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 64297 TTCCCAATT-AGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTG 64355 ||||| ||| ||| || | || ||||| || | |||||||||||| || ||||| Sbjct 47284 TTCCCCATTCAGGAACAC-GAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 47342 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACA 64415 ||||| |||||| | || || | | || |||| |||||| || || | | ||| Sbjct 47343 GACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAGCTCA-CGGACA 47401 Query 64416 G-GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGT 64474 || | |||||||||||| || || || ||||||||| | |||||||| || ||| Sbjct 47402 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 47461 Query 64475 TTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCT 64534 ||||| |||| | | || || | || || || ||| | || ||||| || | |||| Sbjct 47462 ACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCT 47521 Query 64535 ATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGACA 64594 ||| | ||| | || | ||||| ||| || || || | ||||||| Sbjct 47522 ATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACA 47581 Query 64595 AGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCG 64654 || | ||| | |||||||||| || | | || || ||||| | || Sbjct 47582 CGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTT 47641 Query 64655 CTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATC---GTGGGTCGTCGTTTG 64711 ||| || || |||||| | ||||| || |||| | | ||| || || | Sbjct 47642 GTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTACC 47701 Query 64712 GTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT 64771 |||| || ||||| || ||||||||| || ||||| || || || ||||| | Sbjct 47702 CGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCT 47761 Query 64772 CTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGA 64831 | || || |||||||| ||||| ||||| ||||| |||||| || ||||||||||| | Sbjct 47762 CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCA 47821 Query 64832 TCTCTCGGGACGAGGG 64847 || ||| |||||||| Sbjct 47822 TCAGTCGTGACGAGGG 47837 >seq2993 Length=38503 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| | || |||||||| || || || || || ||| | Sbjct 7491 ATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 7432 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| ||||||||||||||||| || || ||| Sbjct 7431 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGAC 7372 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || || || | ||||| Sbjct 7371 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 7312 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 7311 AACATCCAGAAGG 7299 >seq1938 Length=18534 Score = 122 bits (134), Expect = 1e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | ||||||||||| ||||| || || || ||| | Sbjct 173 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCG 114 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || |||||||||||||| || ||||| || |||||| Sbjct 113 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAG 54 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 |||||||| || || ||||| ||||| |||||||| | ||| ||||| Sbjct 53 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCT 7 >seq2980 Length=80372 Score = 113 bits (124), Expect = 5e-20 Identities = 205/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | |||| || | ||| |||| || || ||||| || ||||| ||||| Sbjct 14916 GATAACCAGCGATCGCTGCCATCGGTGGTCGATGGTCTCAAAATCTCGCAGCGGAAGGTT 14857 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 | | ||| || | || || || ||||||| |||||||||| |||||| | || Sbjct 14856 CTGTTCGCTTGTTTAAAACGCAAGCTTACGAGTGAAGTGAAGGTGGCTCAGCTGGCTGGT 14797 Query 32074 TACGTGGCAG--AGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 ||| |||| |||| || || ||||||||||| || || ||| | || || |||| Sbjct 14796 TACT--GCAGTGAGCACACAGCTTATCACCACGGAGAAGCCTCGTTACACTCGACGATTG 14739 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 ||||| | || ||| |||| || || | ||||||||| |||| | || || || | Sbjct 14738 TCAACATGGCGCAGGACTTCGTGGGGTCCAATAACCTGCCGCTACTGTACCCGTCAGGTC 14679 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | ||||| || || || ||||| ||||| ||||| || | || || |||||||| Sbjct 14678 AATTTGGTACTCGACTGCAAGGTGGTAAGGACGCTGCTAGTCCTCGATATATCTTCAC 14621 >seq4260 Length=9660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || || || || |||||||||||| | || || ||||| ||| Sbjct 9651 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 9592 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||| | || || || ||| ||||| || |||| ||||| || || || || Sbjct 9591 CAGCTGGAGGACGGCCGCACGCTGAGC-GACTACAACATCCAGAAGGAGTCTACACTCCA 9533 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || ||||||| || || ||| Sbjct 9532 CCTGGTGCTGCGTCTGCGTGGCGGA 9508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261830940560