Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2571 190 2e-43 >seq2571 Length=74305 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||||| ||||| |||| |||| || || | ||||||||| |||||| Sbjct 71611 TTTCCATTGCTGACGACCAAACGGGTGTTCTGGCGAGGTGTAGCCGAGGAGCTACTGTGG 71670 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA-----AGATCT 34334 || | || || | ||| | || | | ||| | | | | || | || | Sbjct 71671 TTTATTAGTGGAGACACAAGTGCCCA----CACTC-TGCAGCAGAAAGATATTCATATTT 71725 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||||| | || || || || | |||||| | || || | | |||||||| | Sbjct 71726 GGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAGGATCGGGAGGTTG 71785 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA 34454 | ||| | || ||||| ||||| ||||||||| | |||||||| || |||| || | Sbjct 71786 GAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGACA 71845 Query 34455 GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTG 34513 | || ||||| | || || || | ||||||||| |||| | ||||| ||| || Sbjct 71846 TGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAG-AGGTGATTCACAAGCTG 71904 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||| |||| || |||| ||| ||| |||||||||||| |||||| Sbjct 71905 CGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAAC 71964 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||| || || || ||||||| ||||||| |||||||| || || ||||| | Sbjct 71965 GAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTA 72024 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || ||||||| |||||||| | || ||||| ||||||||||| Sbjct 72025 TCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCC 72084 Query 34694 AGTTACGCTCTGCTCAC 34710 || ||||| ||||| || Sbjct 72085 AGCTACGCGCTGCTGAC 72101 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| || ||||||||||| ||||| || | |||||||| ||||||| Sbjct 72101 GTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGC 72042 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | ||| || || | ||||| || || |||||||| ||||||| ||||||| Sbjct 72041 TGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAA 71982 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || |||||| |||||| |||||||||||| ||| ||| |||| || | Sbjct 71981 GGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGG 71922 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 ||| ||| ||| || ||| ||||| | |||| ||||||||| | || || || Sbjct 71921 TCAGTAGGATTCGTACGCAGCTTGTGAATCACCT-CTGCTAGCTGGTCCACACCTTGGCC 71863 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| || | | || |||| || |||||||| | ||||||||| ||||| Sbjct 71862 AGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTA 71803 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || |||||||| | | || || | |||||| | || || Sbjct 71802 AACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCG 71743 Query 6994 AGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGACGAGAGCTCCTTGGTGTTC 7048 || || | ||||||| || | || | | | | ||| | | || | Sbjct 71742 CGATCCATTGCCGTCCCAAATATGAATATCTTTCTGCTGCA-GAGTG----TGGGCACTT 71688 Query 7049 GTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTC 7108 ||| | || || | |||||||| ||||||||| | || || |||| |||| ||||| Sbjct 71687 GTGTCTCCACTAATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTG 71628 Query 7109 GTCGTCAGCAGCGGAAA 7125 |||||||||| ||||| Sbjct 71627 GTCGTCAGCAATGGAAA 71611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224224853360