Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3105 154 3e-32 seq2993 141 2e-28 seq4261 127 5e-24 seq1938 127 5e-24 seq4260 107 4e-18 >seq3105 Length=35891 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 16581 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCC 16640 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || |||||||| || | ||| ||||||||| Sbjct 16641 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCC 16700 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || || || ||| |||| || || || ||||| ||||| ||| Sbjct 16701 TGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTC 16760 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| || ||||| || || | ||||||||| || Sbjct 16761 TTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTCTG 16798 >seq2993 Length=38503 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 7301 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7360 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | ||| |||||||||||||| || || || || || || Sbjct 7361 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7420 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 7421 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 7480 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 7481 ATCTGCAT 7488 >seq4261 Length=68810 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || |||||||||||||| |||||||| | || || |||||||| || | ||||||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||||||||| || ||||| ||||| | ||| || || || || || |||||| Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| || || | |||||| || Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 158 >seq1938 Length=18534 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | || || || ||||||||||| |||||||| || || || |||||||| ||| Sbjct 7 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 66 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | |||||||||||||| ||||| || |||||||| ||||| | ||| || || || Sbjct 67 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 126 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || ||||| || || | ||||| || || | |||||| || Sbjct 127 TCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 176 >seq4260 Length=9660 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 9524 AGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 9583 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | || || |||||||| || | |||||||||||| Sbjct 9584 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 9643 Query 211023 TGGATCTTTTGTTTCAC 211039 ||||||||||| || || Sbjct 9644 TGGATCTTTTGCTTGAC 9660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159050815810745