Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3105 118 7e-22 seq4261 86.0 4e-12 >seq3105 Length=35891 Score = 118 bits (130), Expect = 7e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| ||||| || || ||||| ||||| || || | Sbjct 16795 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 16736 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||| |||| | | || || |||||| ||||| || || | ||||| || Sbjct 16735 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 16676 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| || || || |||| |||||| | || ||| Sbjct 16675 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 16616 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 16615 AACATCCAGAAGGAGTCGAC 16596 >seq4261 Length=68810 Score = 86.0 bits (94), Expect = 4e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 23601 ATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 |||| | || |||||||||||||| || ||| | || || || |||||||| || || || Sbjct 165 ATTAGTCAAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGT 106 Query 23661 TGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 || | ||||| | | || | | || ||||| || ||||| ||||| | || Sbjct 105 GGAGCCTTCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCC 46 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||| || || |||||||| || || || ||||| || ||||| || Sbjct 45 GCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337981533901004