Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3105 141 2e-28 seq4261 132 1e-25 seq1938 123 6e-23 seq2993 118 3e-21 seq4260 113 1e-19 seq4890 109 1e-18 seq6234 84.2 5e-11 >seq3105 Length=35891 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || ||| Sbjct 16571 ACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGT 16630 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 16631 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCC 16690 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || || ||||| ||| || ||| |||| || | |||||||| | Sbjct 16691 CTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAG 16750 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 |||||| ||||||||||| | || || | ||| | |||||||| || Sbjct 16751 CGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTCTG 16798 >seq4261 Length=68810 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || |||||||| ||||||||||| | || || ||||| ||||| || ||||||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||||||||| || ||||| | ||| || | |||||||| | ||||||| Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| ||||| || || | ||| | ||||| || Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 158 >seq1938 Length=18534 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| ||||||||||| || || || ||||| |||||||| |||||| Sbjct 16 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 75 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| |||||||| ||||| | ||| || | |||||||| | || Sbjct 76 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTA 135 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||||| ||||| || || | ||| | ||||| || Sbjct 136 ATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 176 >seq2993 Length=38503 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 7331 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCC 7390 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 7391 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 7450 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||| || || Sbjct 7451 ATGGTCTTGCCCGTCAAGGTCTT 7473 >seq4260 Length=9660 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| || || || || |||| ||||| ||| || || Sbjct 9514 ACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 9573 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || ||||| ||||| || || Sbjct 9574 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 9633 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| |||||||||||||| || Sbjct 9634 TTCCTTGTCCTGGATCTTTTGCTTGAC 9660 >seq4890 Length=10138 Score = 109 bits (120), Expect = 1e-18 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGATG 193582 ||||| ||||||| |||||||||| ||| ||| |||||| | || || | || Sbjct 4657 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAA- 4599 Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642 ||| || | ||||| || | |||| | | || ||||||| ||||||||||||| || Sbjct 4598 CCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATA 4539 Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702 ||| | ||||| || | || || |||| ||||| |||||||| || || || || Sbjct 4538 CAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAA 4479 Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAG 193749 | |||||| | |||| ||||| |||||||||||||| |||| Sbjct 4478 CAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAG 4432 >seq6234 Length=1059 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| ||||| ||| ||||||||||||| ||||| || || | | Sbjct 336 AGAGTTGGTAAGGTTCTGCGCGTTTTATTGAATTAAACCACATGCTCCAACGATTGTGTA 277 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTA-GTACTCAGGTGGA-ATAT 7848 | || |||||| || |||||| ||| || || ||| | || | ||||| ||| | | Sbjct 276 AACTCCCGTCAATTCCTTTGAATTTCAATCTCGCGATTATACTTTTTCAGGCGGAGAGCT 217 Query 7849 TTACGCGTTAGCTTAATTA-ATATAAAAA 7876 | | ||||||||| |||| || |||||| Sbjct 216 TAATGCGTTAGCT--ATTATATCTAAAAA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192427102088222