Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3105 165 2e-35 seq2993 149 1e-30 seq4261 132 1e-25 seq4811 123 5e-23 seq4260 113 9e-20 seq2980 109 1e-18 seq6376 102 2e-16 seq3370 95.1 3e-14 >seq3105 Length=35891 Score = 165 bits (182), Expect = 2e-35 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || || || |||||||||||||| | Sbjct 16565 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 16624 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 16625 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 16684 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| || || || ||| || || | || || ||||||| | || | Sbjct 16685 GATTCCCTCCTTGTCCTGAATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCA 16743 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 16744 CGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 16796 >seq2993 Length=38503 Score = 149 bits (164), Expect = 1e-30 Identities = 148/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 7301 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7360 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 7361 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 7419 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| |||||||| ||||| || || Sbjct 7420 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 7479 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 7480 GATCTGCAT 7488 >seq4261 Length=68810 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| || || || || || ||||||||||| || |||||| ||| || || |||||| Sbjct 1 TCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 60 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || ||||||||| || ||| | ||||| | |||||||| || || || || |||||| Sbjct 61 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 120 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || ||||| ||||| ||||| |||||||| || Sbjct 121 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 158 >seq4811 Length=93528 Score = 123 bits (136), Expect = 5e-23 Identities = 602/939 (64%), Gaps = 33/939 (4%) Strand=Plus/Plus Query 229536 TTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGG 229595 ||||| ||||| | | ||| | ||| | ||||| ||||| || | ||| |||| ||| Sbjct 47284 TTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGG 47343 Query 229596 ACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACGA 229654 || | ||||| || ||| |||| ||| || |||||| || || |||| || Sbjct 47344 ACGGCTGAGGAGCTCGACCTTG-TGCACGACCTCAAGGACTGGAGCAAG---CTCACGGA 47399 Query 229655 CGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGT 229714 | | || || || |||||||||||| | |||| || || |||| ||||||||||| Sbjct 47400 CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGT 47459 Query 229715 GATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTT 229774 || || |||||| | ||||||||| |||||| ||| || ||||| || || Sbjct 47460 GAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTT 47519 Query 229775 TTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGA 229834 || | | ||||| || ||| |||| ||||| || | || || ||||| Sbjct 47520 CTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGA 47579 Query 229835 CGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCCC 229894 | || ||| |||| | ||| | | | || | ||||| || | |||||| Sbjct 47580 CACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCC 47639 Query 229895 GGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAA---TCGTT 229951 ||| || || || | ||||| | |||||| || || || | || | Sbjct 47640 TTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTA 47699 Query 229952 TGCAGAGCGTCTCGTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCT 230010 | ||||| || | || | | ||| || || || || | ||||| || ||||| Sbjct 47700 CCCGGAGCGCCTGCTGGCTTTCG-CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCT 47758 Query 230011 GCGCCATCTTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACG 230067 || |||||||||||||| || ||| ||| |||||||||| || | | ||||||| Sbjct 47759 GCTCCATCTTTTGGCTA---AAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 47815 Query 230068 AATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGAAGC 230127 | ||||||| | ||||| || | ||| | | || | | | ||||| || |||| Sbjct 47816 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 47875 Query 230128 TAAATAACAAACTACCTTTCGA-AACGGTG-AAAC-AAATCGTCACAGAAGTAGTTGCAA 230184 | | ||| || || || | | ||| | || | ||| | || | || | | Sbjct 47876 TGGTCACCAAGCTGCC---AGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTGA 47932 Query 230185 ATGAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGAT 230243 ||| | ||||| | | ||| | | ||| || | || || || ||||| ||| Sbjct 47933 TTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAG-CTGATTGGTATGAACTCTGCC 47991 Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG---GTAC 230300 |||||| | || || || || ||||| ||||| ||| | || |||| || || | Sbjct 47992 CTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTCC 48051 Query 230301 GAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGG 230360 ||| | || || | |||||||| || | | ||||| | || || ||||| || Sbjct 48052 AAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 48108 Query 230361 AAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGCC--CGGTGTATTAAAA 230417 || || ||||| ||||| |||||||| |||| || || |||||| || || | Sbjct 48109 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCCGGCGTTGGTGTCGCC 48168 Query 230418 CCTGAGGATAATGTTTTCGCTATGGACGGTGACTTTTAA 230456 ||||||| | |||||| || |||| | ||||||||| Sbjct 48169 GCTGAGGAGCAGGTTTTCACTCTGGATGCGGACTTTTAA 48207 >seq4260 Length=9660 Score = 113 bits (124), Expect = 9e-20 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | || || || |||||||||||||| Sbjct 9509 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 9568 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||||||| || |||||| ||| Sbjct 9569 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9628 Query 282993 ATACCCTCCTTGTCTTGGATC-TTTGCTT 283020 || || |||||||| |||||| ||||||| Sbjct 9629 ATGCCTTCCTTGTCCTGGATCTTTTGCTT 9657 >seq2980 Length=80372 Score = 109 bits (120), Expect = 1e-18 Identities = 292/443 (66%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || || || | |||||||| || | |||| ||||| || || Sbjct 14461 AGACCAACCCGTACCGATTCCTTCCGCCCCATTCACAAGCAACATCGGAATAATAGGCAC 14520 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || | ||||||| |||||||||| ||| |||| || || || Sbjct 14521 GTAGTACACTGGCTCAACAGGGAAGCCATCGTCGTCGGCGTAGCGTAACAGCGCGTCGTC 14580 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 || ||| ||| || || || | |||| |||||| || || | | ||| Sbjct 14581 TTCTTCGGGGAATACCAAGCGAGTGTGCTTCTGCAGTAACGTGAAGATATATCGAGGACT 14640 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCT-CGGG--CAGTAGC-- 273854 ||| |||||| ||||||||||| | | |||||| ||||| |||| ||||||| Sbjct 14641 AGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGACCTGACGGGTACAGTAGCGG 14700 Query 273855 CAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGG 273914 ||| |||| || || ||| | ||||| ||||| || || || ||| || | Sbjct 14701 CAGGTTAT-----TGGACCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGTAAC 14755 Query 273915 GATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACC 273974 || | || ||||||||||| || |||| || | |||||| | |||||| ||| Sbjct 14756 GAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACCAGCCAGCTGAGCCACC 14815 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGC 274034 ||||| || ||||| | || || || || | ||| ||||||||||||||| Sbjct 14816 TTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAACCTTCCGCTGCGAGATT 14875 Query 274035 TTGAACCCATCAACGACCGATGG 274057 |||| ||||| || |||||||| Sbjct 14876 TTGAGACCATCGACCACCGATGG 14898 >seq6376 Length=24334 Score = 102 bits (112), Expect = 2e-16 Identities = 254/383 (66%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | ||||| | |||||||| || || |||||| | || ||||| Sbjct 13217 GGGTTGTAGTTGGGAACTGAGCTGGACCAACCCGTTCCGATACCGTCACTGCCGTTCACG 13276 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | ||||||||||||| || |||| ||||| || | || || || | Sbjct 13277 AGCACCATGGGGATAATTGGGATGTACCATTCCGGCTCGATGGACTGGCCGTCTTCATTC 13336 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 || ||||||| || | | ||| | | || | | || || | | | || Sbjct 13337 AGATACTTCAGACAATCGTTGTCCAAAGGATCGTAGATACGGCGAGTAAGCTGCTCTAGG 13396 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || |||||||| || | ||||| || ||| || ||||| ||| | || ||| ||| Sbjct 13397 TTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCGAAC 13456 Query 273837 TGACCC-TCGGG--CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 13457 TGACCAATCGGGGACAGTAG---GTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13513 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||||||| ||||| || | ||| ||||| || ||||| ||| || | | Sbjct 13514 TTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 13573 Query 273954 TAACCACTGAACTGAGCAACCTT 273976 || ||| ||||| || ||||| Sbjct 13574 TAGCCAGCCAACTGTGCCACCTT 13596 >seq3370 Length=25312 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| Sbjct 15339 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGG 15280 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 15279 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGC 15220 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| | || || |||| || || || ||| Sbjct 15219 TTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGAC 15160 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGAT 316373 || || || ||||| |||| ||| |||| Sbjct 15159 TTACCGGCACCGTTGGGTCCCAGCACAGCGAT 15128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046647828499702