Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3282 143 6e-29 seq4691 125 2e-23 seq6281 87.8 4e-12 >seq3282 Length=26433 Score = 143 bits (158), Expect = 6e-29 Identities = 675/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 16042 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 15983 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 15982 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 15923 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| || ||||| |||| ||| || || || Sbjct 15922 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 15863 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCG-ATACCTGGGCAT 319228 || || |||||||| |||| |||| |||| | | || | | || | || Sbjct 15862 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGT-CACAG 15804 Query 319229 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 319287 | ||||| | | || | |||||| |||| | | | ||| || | Sbjct 15803 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTA-CGAACAGTTGGTCAAA 15745 Query 319288 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 319347 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 15744 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 15685 Query 319348 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 319404 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 15684 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 15628 Query 319405 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 319464 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 15627 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 15571 Query 319465 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 319524 || ||| || || ||||||||| || |||||||| ||||| || | | | | |||| Sbjct 15570 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTAACG 15511 Query 319525 TCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTG 319584 | | ||| | ||||||| | || ||| ||||| ||| | ||||| Sbjct 15510 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 15451 Query 319585 GTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 319644 || ||||| ||||||||||| | | || ||| | | ||| ||||| || || | ||| Sbjct 15450 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 15391 Query 319645 TTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATC---- 319700 ||||| ||||| || || ||||| || | || ||| || || || Sbjct 15390 TTCATCTTCCAACCACCCGAAAGGGTACCCA------CACCCTGGGCCTGCATCTCGGGG 15337 Query 319701 --AAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTT 319758 ||||| || | ||||| | ||| || | || | | |||| ||| Sbjct 15336 GTGAAGCCGACACCAGCAAGAGTGTCTTCGACCTCCTTGCGGGGC---GTGTT---CTTC 15283 Query 319759 ACTTGTTCATCATTG-GCA--ATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCG 319815 | | ||||||| | || |||||||| | | || | || |||| | | ||| Sbjct 15282 A---GGTCATCATCGATCAGGATGAAGTCCACAA----CG-GACAG-CTCGGCCTCCTCG 15232 Query 319816 ------AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 319868 || | ||| || ||| | |||| || | ||| ||| | |||||| || || Sbjct 15231 GCCTGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCAT-CGCGGCTGGGGAATCCCTC 15173 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || || ||||||||||| || ||||| ||||| || || || Sbjct 15172 AAGCTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACCGTTGGGACCGCA 15113 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| || || || ||| | || | ||||||||| ||||| | || Sbjct 15112 CAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACC 15053 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||| || || || || || || || | ||||| || Sbjct 15052 ACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 15017 >seq4691 Length=143056 Score = 125 bits (138), Expect = 2e-23 Identities = 558/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| || || | | ||| ||||| | ||||||||||| || | ||| | ||||| Sbjct 52917 GTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTG 52976 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| ||||||| | || | ||| ||| || |||||| | || |||| | Sbjct 52977 GACGGCTGAGGA-GCTCGACCTTGTGCACGACCTCAAGGACTGGAGCAAG---CTCACGG 53032 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || |||| || || |||||||| ||| | || | || ||||||| | || ||||| | Sbjct 53033 ACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCG 53092 Query 229937 TGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 229996 ||| || || || | ||||| || ||||| ||| || ||||| || | Sbjct 53093 TGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCT 53152 Query 229997 TTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTT 230052 | |||| | ||| | |||| | ||| || || || || || | ||||| Sbjct 53153 TCTATGGCTTCCAGATCGCCATTGA--GAAC--ATTCACTCGGAGGTCTACTCACTGCTC 53208 Query 230053 ATCGACGCGCTTATTTCCGACGAG--CAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 || ||| || || |||| | | |||| | || | || | ||||||||| | Sbjct 53209 ATTGACACGTACATCAAGGACGCGATCGAGAAGG--ACCATCTCCTGCGTGCCATTGAGA 53266 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| || || ||||| | ||||| | || ||| || || || || Sbjct 53267 CCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTAT 53326 Query 230171 CGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 | | | || ||||| || | || | | ||| ||||| || | || || || Sbjct 53327 CCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 53386 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 ||||||| ||||||||||||| ||| || | ||||| || || | | || | Sbjct 53387 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 53446 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| |||||||||| |||||||| | || | |||| | ||| |||| || | Sbjct 53447 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCA 53506 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGTTGAA 230406 |||| | |||||| ||| ||| || | || | |||||| || || || | Sbjct 53507 AGCTGGTCACCAAGCTGCCAGA-GAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTG 53565 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | || | ||||| | ||||| | | || ||| | || ||||| |||||| ||| Sbjct 53566 ATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCTGC 53624 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT---TA 230522 || ||| | |||||||| || ||||| || ||||| | | | |||||| | Sbjct 53625 CCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTC 53684 Query 230523 CGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | ||| | ||| || |||||||||| |||| | ||||| | || || || ||||| Sbjct 53685 CAAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGG 53741 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||| ||||| |||||||| Sbjct 53742 CAAGACCAACTTTTTCGAGAAGCGTGT 53768 >seq6281 Length=24111 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 || || ||||| ||||| | ||||| || ||||||||||||| ||| | || || Sbjct 13356 AGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCG 13415 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 |||||||| ||| ||| || ||||| ||||| || ||| | ||||| |||| Sbjct 13416 AACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13475 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA 281915 || ||||| ||||| || | ||||||||| || ||||| ||| || | || Sbjct 13476 TTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 13535 Query 281916 TAACCACTGAACTGTGCTACCTT 281938 || ||| |||||||| ||||| Sbjct 13536 TAGCCAGCCAACTGTGCCACCTT 13558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057732867140120