Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4771 143 3e-29 seq4691 141 1e-28 >seq4771 Length=9300 Score = 143 bits (158), Expect = 3e-29 Identities = 700/1109 (63%), Gaps = 6/1109 (1%) Strand=Plus/Minus Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || || || |||||||| ||||| || | || | |||| |||| || || | || Sbjct 4161 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGCTCTCGAACGCGTAG 4102 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 4101 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4042 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 | || || | ||| |||| || ||||||||| || | || || | || || ||| Sbjct 4041 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGG 3982 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT 53689 || | || || |||||||| || | |||| | | || || || | | Sbjct 3981 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 3922 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 |||||||| || || | ||| |||| || || || || ||||||| | || Sbjct 3921 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 3862 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 || | || | || ||| | || || | ||| || || || || || || || Sbjct 3861 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 3802 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||| |||| || ||||| || || ||||| ||| || || |||||||| | Sbjct 3801 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 3742 Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCT 53928 |||| || || ||| | |||| || ||| | | | | || || || | Sbjct 3741 TCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCT-T 3683 Query 53929 TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 ||||| | ||||| ||||||||| || ||||| | || || |||||| Sbjct 3682 CTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGC 3623 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 3622 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 3563 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 ||| | ||| || || ||| | || | || | || ||| || || ||||| Sbjct 3562 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTT 3503 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 ||||| |||||| | | | || | |||||||| |||||||| || | | Sbjct 3502 ACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGA 3443 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 || || || ||| ||||| || | || | ||| |||| ||| | || | ||| Sbjct 3442 GCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAA 3383 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 ||| || ||||| || || || | || || || ||| ||| ||||| | |||| || Sbjct 3382 CATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCG 3323 Query 54289 AATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 3322 GATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 3265 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| || || || |||||||| ||| |||||| ||| | ||| || || | Sbjct 3264 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAA 3205 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 3204 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAAC 3145 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || | || | || | ||||||||| | || || | || || | | || || ||| Sbjct 3144 TTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCT 3085 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGG 54555 | || ||||||| | ||| ||||| || Sbjct 3084 AACGCTACACGCAGAATCATTTGCTGCGG 3056 >seq4691 Length=143056 Score = 141 bits (156), Expect = 1e-28 Identities = 385/581 (66%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 53492 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 53433 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 53432 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 53374 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-----CGCTG-TC 24307 || ||||| || || || || || | || | || || || ||| | || Sbjct 53373 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 53314 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 53313 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 53257 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | | ||||| || || || | || || | || || ||||| | || || Sbjct 53256 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 53197 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| |||||||| |||||||| || || || || ||||| || | |||||||| Sbjct 53196 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 53137 Query 24488 AATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 53136 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 53079 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 ||||| || || || | || || || || || | | |||| || || || || Sbjct 53078 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 53019 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 53018 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 52959 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 || || ||||| | ||| | || || | ||||| || || Sbjct 52958 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 52918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593671697699520