Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2482 221 1e-52 >seq2482 Length=72606 Score = 221 bits (244), Expect = 1e-52 Identities = 304/420 (72%), Gaps = 4/420 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 ||||| ||||| ||||| ||||| ||||| ||||| || | |||||||||||| || || Sbjct 72199 AGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATGACGTGGATGAACTCGCCA 72140 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 || | || ||||| | || || |||| || | |||||||| | ||||||||| ||||| Sbjct 72139 GGTTTTAGTCCCGTCACTTGTGCAACCA-GTCGTGTCAGCAGCGCGTAGCTGGCAATGTT 72081 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| |||| |||||||||| ||| || || | ||||| Sbjct 72080 GAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGACACGATAATTCCCC 72021 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | || |||||||||||||| | | |||||| |||||||||||||| || || || Sbjct 72020 GTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCATCTCGTTGAGATC 71961 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 ||||||||||| || | || || | ||| | | || ||| | | || Sbjct 71960 GGCCGGGTTCCACGCCGACAGCACAATCCTTCGGTCAGTAGGATTCGTACGCAGCTTGTG 71901 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 |||| || ||||||||||| || || || ||| |||| | || | |||| || Sbjct 71900 AATCACCTCTGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCTG-CATGCATGTCCGTGT 71842 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| || ||||| | ||||||||| ||||| || || || ||||| || ||||| Sbjct 71841 ACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCAAGGTCTCCAACCTCCC 71782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590027204044960