Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4119 102 7e-17 seq3030 100 2e-16 >seq4119 Length=9781 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || ||||| | ||||||| || | ||| |||||||| || ||||| ||||| Sbjct 9626 GTTTCCGCCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 9685 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || ||||||||||||| ||||| || | || | | ||||||||| Sbjct 9686 ACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGG 9745 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 || | |||||||||||| ||||||||| || || Sbjct 9746 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGAC 9781 >seq3030 Length=90490 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || |||||||| || ||||| ||||||| | Sbjct 71571 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 71630 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 71631 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 71690 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || || || || | | | | | || |||||| Sbjct 71691 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 71750 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||||||||| || | || ||||| || || |||||||| Sbjct 71751 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 71800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422224596386384