Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4691 329 3e-85 seq3030 161 1e-34 seq2928 127 2e-24 seq4119 114 1e-20 >seq4691 Length=143056 Score = 329 bits (364), Expect = 3e-85 Identities = 440/603 (73%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | |||||||| || | | || |||||| |||||| Sbjct 52894 GAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTAC 52953 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || || |||||||| || |||||||| | |||||| | ||||| || || | | | || Sbjct 52954 AAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAG 53013 Query 116710 CGACTGGGAGC--GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| ||| ||| | ||||||||||| || ||||||||||||||||| ||||| Sbjct 53014 -GACTGG-AGCAAGCTC-ACGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTC 53070 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||||| ||||| ||||| |||||||| ||| | | ||| | || ||| Sbjct 53071 TTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTG 53130 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| ||||||| || |||||||| ||||| ||||||||||| |||||| | |||||| Sbjct 53131 CAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCG 53190 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 || | || || ||||| ||||||||| | || |||||| || | | Sbjct 53191 GAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAAGGACCATCTC 53250 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| ||||| || || || |||| ||||||| | ||||| || ||| Sbjct 53251 CTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGG 53310 Query 117008 ATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || || || | | || ||| | ||||||||| |||| ||||| || || || || Sbjct 53311 TGCGACCCGC-GTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGG 53369 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | ||||||| |||||| |||| | |||| |||||||| ||||| |||||||||||||| Sbjct 53370 CATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCC 53429 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| |||| ||| |||||||||||| | |||||||| |||| ||||| || Sbjct 53430 CGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGC 53489 Query 117187 CTG 117189 ||| Sbjct 53490 CTG 53492 >seq3030 Length=90490 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| |||||||| ||||||| || | Sbjct 71800 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 71741 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||||| | | | ||||| | ||||||| ||||| ||||| ||||| | ||| Sbjct 71740 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 71681 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||| Sbjct 71680 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 71621 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | || ||||| || ||| |||| || | || || ||| Sbjct 71620 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGC 71567 >seq2928 Length=26498 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| |||||||| ||||||| || | | Sbjct 7466 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 7407 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 7406 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 7347 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 7346 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 7287 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 7286 ATCCAGAAGG 7277 >seq4119 Length=9781 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| |||| || | ||||| || |||||||| | |||||||| || | |||| || Sbjct 9780 TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCG 9721 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| |||| ||||| || | ||||||||||||||||||||| | | Sbjct 9720 CTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTA 9661 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || || ||| |||| || | ||||| Sbjct 9660 CTCTTCACCTGGTGCTGCGTCTGCGTGGCGG 9630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175895826240