Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4771 138 1e-27 seq3030 123 2e-23 seq2928 93.3 4e-14 >seq4771 Length=9300 Score = 138 bits (152), Expect = 1e-27 Identities = 298/441 (68%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || ||| |||| ||| ||||||||||| ||| || Sbjct 4777 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGT 4718 Query 132977 CACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATG 133034 || | || || ||| || ||||||| | |||| ||| |||||||| || Sbjct 4717 CAGCTTACTGAT--AGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATA 4660 Query 133035 AAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTC 133094 ||| ||||||| || | || || | | | ||| ||||||||||| ||||| Sbjct 4659 TAAGCGCCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTC 4600 Query 133095 TTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 ||| | | ||| |||| | || || || | | |||||||| || || || Sbjct 4599 TTGTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCA 4540 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 || ||||| || || | |||||| || ||||| |||| ||||| ||| | || | Sbjct 4539 TTCAGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 4480 Query 133215 AGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 ||||||| ||| || | | |||| ||| || || | ||| || | | || | || || Sbjct 4479 AGATACTTGTTAACGATCGTGAA-CTCACCAGCCAAAACACGACGGTTGTACATGTTGGA 4421 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 |||| | || |||| ||| ||||||||||| || ||||| ||||| | || || ||||| Sbjct 4420 CGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCAT 4361 Query 133334 GTACGCCACCAACAAAGAGTT 133354 | || |||| || ||||| Sbjct 4360 GGGTGCAACCAGCAGCGAGTT 4340 >seq3030 Length=90490 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || |||||| || Sbjct 71585 CAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTC 71644 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| ||||||||||| || || || || ||||||||||| Sbjct 71645 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTC 71704 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| || || || | || | | |||||| ||| || |||| || | || Sbjct 71705 CTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGT 71764 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || ||||||||||| Sbjct 71765 CTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 71797 >seq2928 Length=26498 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 7279 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7338 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || || ||||||||||| ||||| || || || | || Sbjct 7339 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7398 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||||| ||| || |||| || | || ||||| |||| || || ||||| Sbjct 7399 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 7458 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 7459 ATCTGCATG 7467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433794848141008