Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3030 125 5e-24 seq2928 118 7e-22 seq4119 113 3e-20 >seq3030 Length=90490 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| ||| Sbjct 71571 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 71630 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| || | ||||||||| ||||| || || ||||||||||| | |||| Sbjct 71631 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 71690 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || || ||||| | || | | || || | || || || Sbjct 71691 -ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 71749 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | ||||||||| ||||| || || || || || || |||||||| Sbjct 71750 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 71797 >seq2928 Length=26498 Score = 118 bits (130), Expect = 7e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 7279 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7338 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | | ||||||||| || || ||||| | || | | Sbjct 7339 AGGCGCTGCTGGTCAGGCGGG-ATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 7397 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || || | || || ||||| | ||||||||| ||||| || | || |||||||| Sbjct 7398 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 7457 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 7458 GATCTGCAT 7466 >seq4119 Length=9781 Score = 113 bits (124), Expect = 3e-20 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| ||||| | |||||||||||| | |||| || ||||| ||||||||||| Sbjct 9629 TCCGCCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCACT 9688 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 |||| ||| |||| |||| ||||||||| ||||| || | ||||||||||| | ||| Sbjct 9689 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGG 9748 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311 | | || |||||||| ||||||||||| Sbjct 9749 G-ATGCCTTCCTTGTCCTGGATCTTTTGCTT 9778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323045524653440