Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4020 111 3e-19 seq4691 109 1e-18 seq4784 91.5 3e-13 >seq4020 Length=55032 Score = 111 bits (122), Expect = 3e-19 Identities = 259/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| ||||| || || ||||||||||| || ||| |||| Sbjct 51761 CTACCCCACTTGCTGTTCTACGGACCTCCAGGTACTGGCAAGACGTCCACGATCGTGGCT 51702 Query 254061 CT--GGCCCGAACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | ||| | ||| || |||| | || || || | ||| | || |||||||| Sbjct 51701 GTGGGGCGCCAACTCT-TTGGCCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTGAA 51643 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || || || || || | | || || ||||| ||| |||||| ||| || || Sbjct 51642 CGCGTCGGATGACCGAGGTATCAAGGTGGTACGCGAGAAGGTCAAGAGCTTCGCCCAG-G 51584 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 || | | || ||| |||| ||||| || || || | | || || ||||| Sbjct 51583 GTGCCATCAGCAGTGCCA--GCGGCCTACCGCCCTTTAAAATCATCGTACTCGATGAGGC 51526 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 || ||||||||| ||||||||| || || || || || | |||||||| | ||| Sbjct 51525 CGATTCCATGACGGGCGACGCGCAATCTGCGCTGCGTCGCATGATGGAGAATTATTCCAA 51466 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCT 254354 || || || |||||||| | || |||||||| |||| ||||| | || |||| Sbjct 51465 GGTCACTCGCTTTTGCCTCATCTGTAACTACGTGAGTCG--CATCATTGAGCCTGTGGCC 51408 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||| || || || Sbjct 51407 TCGCGTTGTGCCAAATTCCGCTT 51385 >seq4691 Length=143056 Score = 109 bits (120), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 157197 AAAAGTCCGCATCCAAAC--AAAACTGCTGCTTCTCACGTTCGAGCAAAACCCCGGGCTT 157254 ||||||||||||||| | ||||| ||||| |||| ||| ||| |||| ||| Sbjct 53839 AAAAGTCCGCATCCAGAGTGAAAAC--CTGCTCCTCAGCGGCGACACCAACGCCGGCCTT 53782 Query 157255 GCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTC 157314 | ||||||| |||| | ||||| |||||||||||||| || |||||||| |||||||| Sbjct 53781 GGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTC 53722 Query 157315 CATCCACTCGAATGGGTT 157332 |||||| || || ||||| Sbjct 53721 CATCCAGTCAAAAGGGTT 53704 >seq4784 Length=17980 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 |||||||| || || ||||| |||||||||||||||||| | | ||| |||||||| Sbjct 15305 CTCTGAATGGGCTCAATGATCTTGGTGGAGTTGTTGCAGGCCAATGCGAATCGCGTCGTT 15364 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCT 115533 |||| | | ||||| | ||||| || ||||| || ||| |||||| ||||| Sbjct 15365 GCCGAGAAGATCTCCATAGTACGTCGTAGAGCCTGCTGGGCTGCAGCTGTCATTGAGTCG 15424 Query 115534 GCCTCGTCGAGAACGACAATCTT 115556 |||||||| | | ||| ||||| Sbjct 15425 GCCTCGTCCAATATGACGATCTT 15447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073673893682432