Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4771 273 2e-68 seq3030 138 1e-27 seq2928 113 4e-20 seq4119 100 3e-16 seq4120 93.3 4e-14 >seq4771 Length=9300 Score = 273 bits (302), Expect = 2e-68 Identities = 1209/1894 (64%), Gaps = 41/1894 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| || |||| || ||| ||| | || |||||||| Sbjct 4819 CTTGTCCACAGTGAACTGGATAGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 4760 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| |||||||| || || ||||||| || | | |||| Sbjct 4759 GGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGTCGG 4700 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||||||||| |||| | || || || || || | Sbjct 4699 GTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCCACGGTCAGCCGA 4640 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | | | | | || ||||| || ||||||||| | | | | || Sbjct 4639 CAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAACATC 4580 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT-TAA 22403 ||| || | || | |||| || || || || | | ||| ||| || Sbjct 4579 ATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAATCTGATTACGTAC 4520 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 | ||| ||| | |||| || | | || || | ||||| ||| || | | Sbjct 4519 TTCCGGCGT-CCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAACGATCG 4461 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | ||| || || || | ||| |||||||| ||| | || |||| ||| Sbjct 4460 TGAA-CTCACCAGCCAAAACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGATAGAC 4402 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| |||||||| || || || |||||||| || || | ||| |||||| Sbjct 4401 TCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCAGCGAG 4342 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG-AGCATCGACCAGTCCCA-----CAGA 22636 || | | ||||| ||||| | |||| || | ||||| ||| |||| Sbjct 4341 TTACGGAGACCGTG-TTTGATGACGTCATCTTTTAGTGCGGCCCAGTTCCAAAGCCCAGA 4283 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTG 22696 | || || || || | ||||||| ||| | || || | || ||| ||||| | Sbjct 4282 T--GAAGGTGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGAG 4228 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGC 22755 || | | |||| ||||| ||||| || || ||||| || || | || ||||| || Sbjct 4227 CCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGACGTCTCCATGGC 4169 Query 22756 GCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTA 22815 | | || || ||||||||||| |||||||||||||| || ||| ||| | Sbjct 4168 AGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGCTCTCGAA 4109 Query 22816 CGGCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 || | || ||| | | |||||| ||||||| |||||| ||||| ||||| || || | Sbjct 4108 CG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGAC 4050 Query 22875 GGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTC 22934 | | || || ||| ||||| | | |||||| | || ||||| Sbjct 4049 GATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCT 3990 Query 22935 TGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC 22994 |||| | ||| | || | | || | | ||||| | || | Sbjct 3989 TGTTAAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACAC 3930 Query 22995 CCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 | || | |||||| | | || | || || | ||||| || |||||||| | Sbjct 3929 CGTTTT---CCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCAT 3873 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 | ||||||||||| | | |||| |||| ||||| | ||||| ||||| | Sbjct 3872 CGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGT 3813 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | |||||| || || || | ||||||||||||||| | ||| ||||||| Sbjct 3812 TCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCT 3753 Query 23175 CGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC 23234 | | ||| | || | ||| || ||||| |||||||| | ||| ||| | Sbjct 3752 CAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT-GTCTTACGCGCA 3694 Query 23235 TG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 | ||||| | ||||||||||| |||| || ||||| || | || | || ||| | Sbjct 3693 CGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTAC 3634 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGT 23350 || || || | || | ||||| | | ||||||| | | |||| || || | Sbjct 3633 AGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACTCTC 3577 Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 |||| || ||||| || | ||| || ||||| |||| ||||||||||| | ||| Sbjct 3576 TTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCA 3517 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 || ||| |||||| || ||||| || || |||||||| || ||||||||||| | | Sbjct 3516 TTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAG 3457 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTG 23530 || | || |||| |||| | |||| |||||||| || || || || ||||||| | Sbjct 3456 TAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCG 3397 Query 23531 TTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTC 23590 || |||| | | ||| || | | ||||| || | |||| | || ||| | Sbjct 3396 TTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCG--TTCG--TGCCGCGGAT 3341 Query 23591 GAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 | | || || || || | |||||| | || ||| || || || || |||| || Sbjct 3340 GTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGA 3281 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGC 23706 || |||||||| || || |||||||| |||||||| || ||| || | | || Sbjct 3280 GATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGC 3221 Query 23707 GACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766 | | ||| || ||||||| || | ||||| |||| ||| || || ||| | Sbjct 3220 CAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGT 3161 Query 23767 GGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826 ||||||||| ||| | | |||||| || | |||||| || | |||| | ||||| Sbjct 3160 GGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTC 3101 Query 23827 -CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGA 23885 |||| ||| || || | || || |||| ||||| | || || | ||| ||| Sbjct 3100 GCTCT-TGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCT 3042 Query 23886 CGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGT 23945 || || | ||| || || || | | ||| || || || || ||||| || | Sbjct 3041 TACCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTACT 2982 Query 23946 TAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||||| || ||||| | |||||||| ||||| Sbjct 2981 CGAAGTCGCGGTCGTGGATGATGGCCGAGTTCAA 2948 >seq3030 Length=90490 Score = 138 bits (152), Expect = 1e-27 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| || ||||| ||||||| || ||| Sbjct 71800 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 71741 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||||| | || | ||||| |||| ||| ||||||||| || | ||||| ||| Sbjct 71740 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 71681 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| ||| || || || Sbjct 71680 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 71621 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| || || ||||| || | ||| | || ||| ||||| Sbjct 71620 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGCAAGAAG 71561 Query 31426 CG 31427 || Sbjct 71560 CG 71559 >seq2928 Length=26498 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| |||| ||||| || ||||| ||||||| || || Sbjct 7470 AATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 7411 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 7410 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGA 7351 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 7350 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 7311 >seq4119 Length=9781 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | ||||| |||||||||||| | || ||||||||||| ||| |||| Sbjct 9764 GGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGA 9705 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || |||| || || ||||| || || || || |||||||| ||||| || Sbjct 9704 GGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCT 9645 Query 31405 TAGACTGAGGGGCGG 31419 | ||| | ||||| Sbjct 9644 GCGTCTGCGTGGCGG 9630 >seq4120 Length=3454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||| ||||| |||||||| | ||||| || || Sbjct 129 AAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 70 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | ||||| || | || ||||||||||||| | ||||| ||| Sbjct 69 TCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGAC 10 Query 31310 CAGCAGCGT 31318 ||||||||| Sbjct 9 CAGCAGCGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728933334080