Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4691 183 4e-41 seq4771 170 3e-37 >seq4691 Length=143056 Score = 183 bits (202), Expect = 4e-41 Identities = 394/581 (68%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 53492 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 53433 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 53432 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 53374 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CGCTG-TC 50132 ||| ||||| || || || || || | || | ||| || || ||| | || Sbjct 53373 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 53314 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 53313 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 53257 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | | ||||| || || || | || || | || || || || | || || Sbjct 53256 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 53197 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 53196 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 53137 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||||||| | | || ||||| || || || || ||||| || ||||||||| Sbjct 53136 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 53079 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||| || || || | || || || || || ||| |||||| || || || || Sbjct 53078 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 53019 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 53018 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 52959 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || || ||||| | ||| | || || | || || ||||| Sbjct 52958 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 52918 >seq4771 Length=9300 Score = 170 bits (188), Expect = 3e-37 Identities = 708/1110 (64%), Gaps = 8/1110 (1%) Strand=Plus/Minus Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || || || ||||| || ||||| || | || | |||| | |||| || || | || Sbjct 4161 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGCTCTCGAACGCGTAG 4102 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 4101 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4042 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || || | ||| |||| || ||||||||| || | || || | || || || Sbjct 4041 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGG 3982 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT 79599 || | || || |||||||| || | ||| | | || || || | | Sbjct 3981 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 3922 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||||| || ||| ||||| |||| || || || || ||||||| | || Sbjct 3921 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 3862 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || | || | ||| ||| | ||| || | || || || || || || || || Sbjct 3861 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 3802 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 3801 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 3742 Query 79780 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTC 79837 |||| || || ||| | | || |||| || ||| | || | | || || || Sbjct 3741 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 3684 Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 | ||||| | | ||| | ||| ||||| || ||||| |||| | |||||| Sbjct 3683 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 3624 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 ||||| ||||| | ||| ||||| |||| ||| |||| ||||| ||||||| Sbjct 3623 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 3564 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| | ||| || || ||| | || | || | ||| ||| || || |||| Sbjct 3563 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 3504 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 3503 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 3444 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 ||| || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 3443 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 3384 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 |||| || ||||| || || || | || || || ||| ||| ||||| | |||| | Sbjct 3383 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 3324 Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 3323 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 3266 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||| || || || |||||||| || ||||| ||| | ||| || || Sbjct 3265 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 3206 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 3205 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 3146 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || | |||| || | ||||||||| | || || | || || | | || || || Sbjct 3145 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3086 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGG 80465 || ||| ||||||| | ||| ||||| || Sbjct 3085 TAACGCTACACGCAGAATCATTTGCTGCGG 3056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718208429507360