Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4771 165 1e-35 seq4691 150 2e-31 >seq4771 Length=9300 Score = 165 bits (182), Expect = 1e-35 Identities = 709/1111 (64%), Gaps = 10/1111 (1%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || || || ||||| || ||||| || | || | |||| ||||| || || | || Sbjct 4161 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGCTCTCGAACGCGTAG 4102 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 || | ||| || ||||| || || | || || ||||||||||| || || | || | | Sbjct 4101 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4042 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | || || | ||| |||| || ||||||||| || | || || | || || || Sbjct 4041 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGG 3982 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 || | || || |||||||| || | ||| | | || || || | | Sbjct 3981 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 3922 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| || || ||||| |||| || || || || ||||||| | | Sbjct 3921 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 3862 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || | ||| ||| | || || | ||| || || || || || || || Sbjct 3861 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 3802 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| |||| || ||||| || || || || || || || |||||||||| Sbjct 3801 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 3742 Query 71863 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTC 71920 |||| || || ||| | | || |||| || ||| | || | | | || || || Sbjct 3741 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 3684 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGA 71979 | ||||| | | ||| | ||| ||||| || ||||| ||| | || | |||||| Sbjct 3683 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCA-GCACTCGTACAGACCAGGA 3625 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 ||| || ||||| | ||| ||||| |||| | | |||| ||||| |||||| Sbjct 3624 GCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGA 3565 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| | ||| || || ||| | || | || | ||| ||| || || ||| Sbjct 3564 TCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTC 3505 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 3504 TTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAAC 3445 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 ||| || || ||| ||||| || | || | ||| |||| ||| | || | | Sbjct 3444 GAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGC 3385 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 ||||| || ||||| || || || | || || || ||| ||| ||||| | |||| Sbjct 3384 AACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCG 3325 Query 72280 CGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || | ||| | |||| ||| || || || ||| ||||||||| | |||||| Sbjct 3324 CGGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATT 3267 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 | |||| || || || |||||||| ||| |||||| ||| | ||| || || Sbjct 3266 GCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAG 3207 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| || |||| || || || || || | ||||| | |||||||| || Sbjct 3206 AAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA 3147 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | || | |||| || | ||||||||| | || || | || || | | || || | Sbjct 3146 ACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGC 3087 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGG 72548 ||| ||| ||||||| | ||| ||||| || Sbjct 3086 CTAACGCTACACGCAGAATCATTTGCTGCGG 3056 >seq4691 Length=143056 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||||| ||||| || | ||| || | ||||| || || | || Sbjct 53492 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 53433 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || |||||||| || || ||| || || || || ||||| Sbjct 53432 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 53374 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 42237 ||| ||||| || || || || || | || | ||| || || ||| ||| Sbjct 53373 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 53314 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 53313 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 53257 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | | ||||| || || || | || || | || || || || | || || Sbjct 53256 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 53197 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || |||||||| |||||||| ||||| || || ||||| || | ||||||| Sbjct 53196 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 53137 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTG 42475 ||||| ||||| | | || ||||| || || || |||||||| || ||||||||| Sbjct 53136 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 53079 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || || || || | | |||| || | || || Sbjct 53078 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 53019 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || |||| || | | || | || || ||||||| || || || || || Sbjct 53018 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 52959 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || ||||| | ||| | || || | ||||| ||||| Sbjct 52958 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 52918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671082790750240