Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4691 190 3e-43 seq4771 127 3e-24 seq1195 118 2e-21 seq2482 109 8e-19 >seq4691 Length=143056 Score = 190 bits (210), Expect = 3e-43 Identities = 601/894 (67%), Gaps = 48/894 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||||| ||||| |||| | || || | ||| | |||||||| || || |||||||||| Sbjct 52915 CTGTTCCCCATTCAGGAA-CACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTT 52973 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| || ||| |||| || || || | |||| | || ||| | | | | Sbjct 52974 CTGGACGGCTGAGGAGCTCGACCTTGTGCACG-ACCTCAAGGACTGGAGCAAGC---TCA 53029 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | |||||| | || || |||| | | |||||||| || | | || || | Sbjct 53030 CGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTA 53089 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 |||| ||||| || || | || || || ||| || || | || |||| || Sbjct 53090 TCGTGAACGAGAACTTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGC-TC 53146 Query 125231 GT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 || |||| || || ||||| ||| ||||||||| | |||||||| | ||||| | Sbjct 53147 GTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGC 53206 Query 125290 TGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAAT 125344 | ||||||| |||||| ||||||| || | || ||| ||| | || || Sbjct 53207 TCATTGACACGTACATCAAGGACGCGATCGAGAAGG---AC-CAT-CTCCTGCGTGCCAT 53261 Query 125345 CGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-C 125402 || || | || | | | ||| || |||||||| |||| | |||| ||| | Sbjct 53262 TGAGACCATCCCTTGTGTCACG-AAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGC 53320 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | | || || ||| | || | ||| |||| ||||| || || || ||||||||||| Sbjct 53321 GTGTA-TCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTC 53379 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 53380 TCGGGCTCTTTCTGCT-CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAG 53438 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||| | || ||| ||||||||| | ||| ||||| ||| || | Sbjct 53439 CTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTT 53498 Query 125582 GTTTCGCAACTATCTGCGTC-CCGAG-TGC-AGATCCAGCGATGAAAAGGTCATCAACAT 125638 || ||| ||| ||| || || ||| ||| ||| || | | | |||| | Sbjct 53499 GTACTCCAAG---CTG-GTCACCAAGCTGCCAGAG--AGCCGTGTACACGAGATCAT--T 53550 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCA 125697 || || || ||| ||| || || |||||| | || || || || || ||| Sbjct 53551 CGTGAC----GCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGC- 53605 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 ||||||| ||||||| || |||||| ||||||| ||||| ||||| || ||||| | Sbjct 53606 TGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGC 53665 Query 125758 TGTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 | ||| | ||| | | | |||||| ||| |||| ||||| || ||||| | ||| | Sbjct 53666 TCTACTCGCTTGGTGTGTC-CAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 53724 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || | || ||||||||||||||||||||| || |||||||| Sbjct 53725 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 53778 >seq4771 Length=9300 Score = 127 bits (140), Expect = 3e-24 Identities = 318/475 (67%), Gaps = 6/475 (1%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||||||||| || |||||||| ||||| || || || | || |||| || ||| | Sbjct 3453 TCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 3512 Query 96970 GCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTC 97028 | ||| | |||| | ||| | ||||||||||| || || |||||||| ||| | ||| Sbjct 3513 GTAATGA-GCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTC 3571 Query 97029 ATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGT 97088 |||||| | || | | | |||| | ||||| | | || ||| || | || ||| Sbjct 3572 ATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGT 3631 Query 97089 CTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC 97148 |||| ||| ||||||||||| |||||||| || ||| |||||| | || || Sbjct 3632 CTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGA 3691 Query 97149 CG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGG 97206 || ||| |||| | || | || | | |||||| || ||| | ||| |||||| Sbjct 3692 CGTGCGCGTAAGAC-AATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGAC-GCTCAGA 3749 Query 97207 TAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAAC 97266 | ||||| ||| || | ||| ||||||||||| | | || ||||| ||||| | Sbjct 3750 TTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGC 3809 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 ||||||| || ||| | ||| | ||| ||| | | |||||| | || | Sbjct 3810 AGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCAC 3869 Query 97327 CGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || ||| |||||| ||| |||| || || ||||| | |||||| || Sbjct 3870 CCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA 3924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 98015 CATCCCGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC 98073 ||| ||||| || ||| | |||| |||||||| || |||||||| | | || | || Sbjct 4570 CATTCCGGATGATGTTAAGGAGAAG-TACAAGACGGTGTGGGAGAT--CAAGCAGAAGGC 4626 Query 98074 TGATC--GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 || || || || | || ||| | || | || || ||||||||| ||||| || | Sbjct 4627 TGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACAT 4686 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAA 98191 || | ||||| || || |||| |||| || || ||||||||||| ||||| || Sbjct 4687 CCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAA 4746 Query 98192 GGGCCTCAAGACGGGCATGTACTA 98215 ||| |||||||| ||||||||||| Sbjct 4747 GGGACTCAAGACCGGCATGTACTA 4770 >seq1195 Length=41580 Score = 118 bits (130), Expect = 2e-21 Identities = 220/320 (69%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 10257 GAAACCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 10316 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | |||||||||||||||||||| |||||| ||||| || ||||| Sbjct 10317 GCGCAGCAGAGCCGTGTACACGGCAAAGTTGGCGGGCGAGCCAGAGTAGGGCTGTACGTT 10376 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| |||| ||| || | | | || | || |||||||| || Sbjct 10377 GACGCCCCACTTCTCGG---CGTCCAGACCGTAGGCCGTCAGGGCGCGCTGCTGGCACAG 10433 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCC 127677 | ||||| ||||| | ||||||||| || ||||| ||| ||| ||| |||| Sbjct 10434 GATCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGACCC 10491 Query 127678 TCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAG 127737 || | |||||||||| |||| ||||| | || ||| || || | | | ||| ||| Sbjct 10492 TCGGCGTACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCACGCGAGGTGAAG 10551 Query 127738 TTTTCCGATGCGATCAACTC 127757 || ||||| ||||| | ||| Sbjct 10552 TTCTCCGAAGCGATGAGCTC 10571 >seq2482 Length=72606 Score = 109 bits (120), Expect = 8e-19 Identities = 264/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| ||||||||| | |||| || ||||||| ||| Sbjct 71790 GGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 71849 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||||||| | || || ||||| || || | ||||| | ||| ||| | Sbjct 71850 ATGCATG-CAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAGG-TGATTCACAAGC 71907 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | ||||| || ||| | ||||| || || ||| | Sbjct 71908 TGCGTACGAATCCTACTGACCGAAGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCA 71967 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || | ||||| || || || || ||| |||| || ||||| ||| | | || || Sbjct 71968 ACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGC-CAGTTCTACGTTGCCAACGGGGAA 72026 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || || ||||| ||| | ||||||||||| || || || || || |||||| Sbjct 72027 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 72086 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||| | || |||| || | || || || ||| | |||| Sbjct 72087 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 72146 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTA 70455 ||| | ||| ||| |||||||| |||||||| Sbjct 72147 TTCATCCACGTCATCGGCGACGCACACGTGTA 72178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740996913974240