Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2482 123 2e-23 >seq2482 Length=72606 Score = 123 bits (136), Expect = 2e-23 Identities = 328/493 (67%), Gaps = 15/493 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || ||||| || || | |||||| ||||| ||||| || | |||| Sbjct 72211 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATGACGTGG 72152 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG--AGGAGAAAGT 25530 | ||||| || |||| ||| || || || | || | || || |||| || || || Sbjct 72151 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 72094 Query 25531 AGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGA 25590 ||||||| ||||| || || || || | |||||||| || || | |||||| | |||| Sbjct 72093 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCC-GATCGCTGGTACATCTGA 72035 Query 25591 CACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCT 25650 ||||| | || ||| | ||||| ||||| || | ||| ||| || || || || Sbjct 72034 CACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCC 71975 Query 25651 ATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT- 25709 || | | || |||||||| || ||| | || | | ||| || || Sbjct 71974 ATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCTTCGGTCAGTAGGATTC 71915 Query 25710 GTCC----CTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 25765 || | || | | ||| | || | ||||| ||||| || || | ||||| Sbjct 71914 GTACGCAGCTTGTGA-ATCACCTCTGCT----AGCTGGTCCACACCTTGGCCAGTGTAGT 71860 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 |||| |||||||||||||| || || || | | ||||||||| ||||| ||||||| Sbjct 71859 CTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTC 71800 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||||||| | |||| | || | || | |||||| | | || | || |||| Sbjct 71799 CAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCAT 71740 Query 25886 TGGCGTCCCAGAT 25898 || ||||||| || Sbjct 71739 TGCCGTCCCAAAT 71727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340109726148852