Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4691 167 3e-36 seq4771 147 3e-30 >seq4691 Length=143056 Score = 167 bits (184), Expect = 3e-36 Identities = 311/451 (69%), Gaps = 13/451 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 53492 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 53433 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || |||||| Sbjct 53432 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAG 53373 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33477 || ||||| || ||||| || || | || | ||| || || ||| | || Sbjct 53372 ATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC- 53314 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||||| | ||||| | |||||||| | |||||||| || || || |||||| Sbjct 53313 -GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCA 53256 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||||| || || || | || || | || || || || | || || Sbjct 53255 CGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 53196 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 53195 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 53136 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| ||||| | | || |||| ||||| || || ||||| || |||||||||| Sbjct 53135 ACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGG 53078 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAA 33746 |||| || || || | || || || || || Sbjct 53077 CTGCGAAGAAGGCGAGCACGTGCTTGATGAA 53047 >seq4771 Length=9300 Score = 147 bits (162), Expect = 3e-30 Identities = 703/1110 (63%), Gaps = 8/1110 (1%) Strand=Plus/Minus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || || || |||||||| ||||| || | || | |||| |||| || || | || Sbjct 4161 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGCTCTCGAACGCGTAG 4102 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 || | ||| || ||||| ||||| | || || || |||||||| || || | ||| | | Sbjct 4101 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4042 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 | || || | ||| |||| || ||||||||| || | || || | || || || Sbjct 4041 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGG 3982 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62876 || | || || |||||||| || | |||| | | || || || | | Sbjct 3981 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 3922 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 3921 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 3862 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | || | || ||| | || || | ||| || || || || || || || Sbjct 3861 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 3802 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 3801 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 3742 Query 63057 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63114 |||| || || ||| | | || |||| || ||| | | | | ||||| || Sbjct 3741 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 3684 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 | ||||| | ||||| ||| ||||| || ||||| | || || |||||| Sbjct 3683 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 3624 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 3623 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 3564 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 3563 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 3504 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 3503 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 3444 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 3443 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 3384 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCAC 63474 |||| || ||||| ||||| || || || || ||| ||| ||||| | |||| | Sbjct 3383 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 3324 Query 63475 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 3323 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 3266 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 |||| ||||| || || ||||| || ||||| ||| | ||| || || Sbjct 3265 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 3206 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 3205 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 3146 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 3145 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3086 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGG 63742 || || ||||||| | ||| ||||| || Sbjct 3085 TAACGCTACACGCAGAATCATTTGCTGCGG 3056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622894841287840