Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3030 152 5e-32 seq4771 141 9e-29 seq4119 129 6e-25 seq2928 104 2e-17 >seq3030 Length=90490 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 71571 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 71630 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 71631 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 71690 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||||||||||||| | || | | || | | ||| | | Sbjct 71691 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 71750 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 71751 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 71797 >seq4771 Length=9300 Score = 141 bits (156), Expect = 9e-29 Identities = 720/1124 (64%), Gaps = 48/1124 (4%) Strand=Plus/Minus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTG 145111 |||| || |||| | ||||| || ||||| |||||||| |||| ||| |||||| Sbjct 4476 TACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGACGTG 4417 Query 145112 AAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTAC 145171 | || || | ||||||||| ||||||||||| ||||| || | || || |||||| Sbjct 4416 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 4357 Query 145172 GCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAA 145231 || |||| | || || || || ||||| || ||| ||| || ||||| | |||| Sbjct 4356 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTGATGACGTCATCTTTTAGTGCGGCCCAG 4297 Query 145232 TCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 | ||| ||| || | || | ||| ||||||||||| |||| || || |||| ||| Sbjct 4296 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 4237 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCG 145346 || || ||| || || | |||| | ||||| | |||| | ||| || | || Sbjct 4236 GCCGGAGAGCCCTGGAACGTCTCGTAA-GGACCCAATTCCGTGGCAATCTC-CATCGACG 4179 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA--GCAGCATCGCTTC 145404 ||||| || | || || || |||||| || | | |||| | || | |||| Sbjct 4178 TCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGA--GCTTG 4121 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 ||||||| ||| | || || | || ||||| || || ||||| | || | Sbjct 4120 TGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAAT 4061 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGAT-ATCGATTAC 145523 || ||||| ||||| ||||||| | | | ||| | | ||||| || | | || Sbjct 4060 ACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGAC 4001 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAA 145583 |||||| | || || | ||| ||| | ||||| | | || | | Sbjct 4000 -GTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGT 3942 Query 145584 AGTCAAACCGAGCCTCGTCAACGACCACA--CAGCTATTGACGGCGATCGACGCCAAATT 145641 |||| ||| | | | || || | || | |||| || | |||||||| || Sbjct 3941 AGTCGAACACACCGTTTTCCACAAACATAGGCAGC--------GCCACAGACGCCAAGTT 3890 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || |||||| ||| || || | || |||| | | || ||| ||| || ||||| Sbjct 3889 GCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCTGG 3831 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | ||| || |||| || ||||| || || | ||| |||||||||||||||| Sbjct 3830 AACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 3771 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 || | || | || ||||| | ||| | || | |||| ||| || | ||| || Sbjct 3770 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC--CACAGCTGCTGAGC 3713 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAAC 145876 | || | || || || | ||||| |||| | |||||| |||||| Sbjct 3712 GTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCT--TCAAAC 3655 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 | || |||| ||| |||| || ||| | ||||||||| | || ||| | Sbjct 3654 TCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 3595 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCG 145996 || ||||| | || | || ||| || | ||| ||||||||||||||||| | ||||||| Sbjct 3594 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 3535 Query 145997 C--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAG 146050 | |||| |||| |||| ||| ||| ||| || || || | ||| | Sbjct 3534 CGGGCGCGGTGCA--GCTCATTACCGTGGTT---CTTACGCAGATCCAGGA-ACTCGAAC 3481 Query 146051 ATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCC 146107 | ||| ||||||||||| || | |||| |||| | || || || || || ||| Sbjct 3480 ACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCC 3421 Query 146108 TGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||||||| | || || ||| |||||| || |||| |||||| Sbjct 3420 TGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGG 3377 >seq4119 Length=9781 Score = 129 bits (142), Expect = 6e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| || ||| Sbjct 9630 CCGCCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCACTC 9689 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 9690 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9749 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| ||||| ||| || ||||||| Sbjct 9750 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA 9780 >seq2928 Length=26498 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 7277 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7336 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || |||||||| || ||||| |||||||||||||| | | Sbjct 7337 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7396 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || | || || || | Sbjct 7397 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 7456 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 7457 AGATCTGCATGA 7468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471973127324160