Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4691 150 2e-31 seq4771 143 3e-29 >seq4691 Length=143056 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 53492 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 53433 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 53432 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 53374 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TC 32833 || ||||| || || || || || | || | ||| || || ||| | || Sbjct 53373 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 53314 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 53313 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 53257 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | | ||||| || || || | || || | || || ||||| | || || Sbjct 53256 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 53197 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| |||||||| |||||||| || || || || |||||||| | |||||||| Sbjct 53196 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 53137 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 53136 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 53079 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 ||||| || || || | || || || || || | | |||| || || || || Sbjct 53078 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 53019 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 53018 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 52959 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 || || ||||| | ||| | || || | ||||| || || Sbjct 52958 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 52918 >seq4771 Length=9300 Score = 143 bits (158), Expect = 3e-29 Identities = 702/1110 (63%), Gaps = 8/1110 (1%) Strand=Plus/Minus Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || || || |||||||| ||||| || | || | |||| |||| || || | || Sbjct 4161 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGCTCTCGAACGCGTAG 4102 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 4101 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 4042 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || || | ||| |||| || ||||||||| || | || || | || || || Sbjct 4041 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGG 3982 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62731 || | || || |||||||| || | |||| | | || || || | | Sbjct 3981 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 3922 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 3921 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 3862 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || | || | || ||| | || || | ||| || || || || || || || Sbjct 3861 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 3802 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 3801 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 3742 Query 62912 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTC 62969 |||| || || ||| | | || |||| || ||| | | | | || || || Sbjct 3741 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 3684 Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 | ||||| | ||||| ||| ||||| || ||||| | || ||| |||||| Sbjct 3683 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 3624 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 3623 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 3564 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 3563 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 3504 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 3503 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 3444 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 3443 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 3384 Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329 |||| || ||||| || || || | || || || || ||| ||||| | |||| | Sbjct 3383 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 3324 Query 63330 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 3323 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 3266 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||| || || || |||||||| ||| |||||| ||| | ||| || || Sbjct 3265 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 3206 Query 63448 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 ||||| || |||| || || || || || | ||||| | ||||| || || | Sbjct 3205 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 3146 Query 63508 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63567 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 3145 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3086 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGG 63597 || || ||||||| | ||| ||||| || Sbjct 3085 TAACGCTACACGCAGAATCATTTGCTGCGG 3056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633578743230400