Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3282 205 2e-47 seq4691 123 5e-23 seq6281 104 5e-17 >seq3282 Length=26433 Score = 205 bits (226), Expect = 2e-47 Identities = 460/675 (68%), Gaps = 32/675 (5%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| |||| || |||| ||||| | | | Sbjct 15359 GTGGGTACCCTTTCGGGTGGTTGGAAGATGAAACTGGAGCTGGCTCGTGCCATGTTGCAG 15418 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| |||| || ||||||||||| || |||||| |||| || ||||| ||| Sbjct 15419 AAGGCCGACATCCTGCTTCTTGATGAGCCCACGAACCACTTGGATGTCAAGAACGTTGCC 15478 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| ||| ||||| |||| || || |||||| Sbjct 15479 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTTACTTCCATCATGGTGTCGCACGAC 15538 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 ||||||||||| || |||||| | |||||||||||| ||| | || |||||| Sbjct 15539 TCTGGCTTCCTCGACAACGTGTGTACCAACATCATTCACTACGAGACCCGTAAGCTGAAG 15598 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| || ||||| || ||||||| || |||||||| ||| Sbjct 15599 ATCTACAAG------GGTAACCTCTCCAAGTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 15652 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || || || | | || ||||| ||||| ||||| || || || | Sbjct 15653 TACTACGAGCTCGAGTCGGAGAACGTCAAGTTCATCTTCCCCGAGCCTGGTTTCCTTGCT 15712 Query 280053 GGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGC---GTCTCCTTTGC-TT 280107 | |||| | | ||| || || | ||||| | | || | | | | | | | Sbjct 15713 GACATCAAGAACAAGGGTAAGC-CCATCAT-TCGTT---TGACCAACTGTTCGTACCAGT 15767 Query 280108 ATCCCAATGGCCCCAA--CATC-TTCAGCAGTGTCAACTCGCAGGT-TTCTAT---GAAC 280160 | || || |||||| | || ||| || || || | || | || | || | Sbjct 15768 ACCCGGGTGCCCCCAAGCCGTCGATCAACAACATC-TCTGTGACGTGTGCTCTTTCGAGC 15826 Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || | ||| | |||||||| ||||| ||||||||||| || ||||| | ||| Sbjct 15827 ---CGTATCGCTGTGCTGGGACCCAACGGTGCCGGTAAGTCTACGCTGATCAAGATGCTG 15883 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGC 280279 || || || || | || || |||| || |||||||| || |||||| | || Sbjct 15884 ACGGGTGAAGTGGAGCCGAC-CAGTGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGC 15942 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||||||||||||||||||||||||||||| ||| ||||| || |||| | ||||| Sbjct 15943 CTACGTCGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTTGATGAGACTGCCAACCA 16002 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 16003 GTACATCCAGTGGCG 16017 >seq4691 Length=143056 Score = 123 bits (136), Expect = 5e-23 Identities = 541/848 (64%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| | |||||||| | ||||| |||| || ||||| | Sbjct 53759 TCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATCCAGTCAAAAGGGTTCTTA 53700 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| ||||| ||||| | || | ||||| ||||| ||||| | Sbjct 53699 GCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGGTCAGCCACGAACTCAATG 53640 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||||| ||||||| | ||| ||| | |||| | Sbjct 53639 TACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACAGGGAGC-GAGTCACGCAC 53581 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || || | || | | || || || | || | | || | | | ||| Sbjct 53580 AAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTGTACACGGCTCTCTGGCAG 53521 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| | ||||||| ||||||| || | | || | ||||| |||||||| || Sbjct 53520 CTTGGTGACCAGCTTGGAGTACAAAAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACG 53461 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||||||| |||||| || | | ||| || ||||| | || || ||| | ||||| || Sbjct 53460 ACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAA 53401 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | ||| || || || ||||| | | || || ||| | | || | ||||| Sbjct 53400 GATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAAGCCAGCAGGCG 53341 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAAGAACTTCT---GTGCCCATGCTGCCTTCTTTCC 252038 ||| | | || | ||| | || || ||||||| |||||||| Sbjct 53340 CTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGT 53281 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||| || || || ||| | |||| || | |||| |||||| ||| Sbjct 53280 GACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGAT 53221 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | || |||| || || ||||| | |||||| || ||| || || |||||| | Sbjct 53220 GTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAA 53161 Query 252159 AGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGTT 252218 ||||||| ||| || || | ||||| || ||||| | || | ||| Sbjct 53160 GCCATAGAAGCAACGAGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTT 53101 Query 252219 CTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACG 252278 ||| |||| || || || ||| |||| |||||| | || | | |||||||||||| || Sbjct 53100 CTCGTTCACGATACCGTCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCG 53041 Query 252279 CTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTC 252338 ||| | ||| |||||||| | |||||| | ||| || || | || || Sbjct 53040 CTCGTTGTCCGTGAGCTTG---CTCCAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTC 52984 Query 252339 CACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTACTTGA 252397 |||||||||| | || | | || ||||||||||| ||| |||| || | || | ||| Sbjct 52983 AGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGC-CACACTTC-GTGTTCCTGA 52926 Query 252398 TTGGGAAA 252405 |||| || Sbjct 52925 ATGGGGAA 52918 >seq6281 Length=24111 Score = 104 bits (114), Expect = 5e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||||| |||| || || || || |||| |||||||||||||||||| Sbjct 13558 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13499 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||||| ||||| || || ||||| ||||||| || ||||| |||||||| || Sbjct 13498 AGTCTACAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13439 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 | ||| ||| | |||||||| ||| | ||||| ||||||| || || Sbjct 13438 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGA 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027748250574884