Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4691 210 4e-49 seq4880 181 2e-40 seq3282 149 1e-30 seq3030 136 7e-27 seq2914 98.7 2e-15 seq4119 91.5 3e-13 seq4120 86.0 1e-11 >seq4691 Length=143056 Score = 210 bits (232), Expect = 4e-49 Identities = 586/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 ||||| ||||| |||||| || || |||||| ||||||| |||||| | ||| Sbjct 53792 ACGCCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGA 53733 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || || | ||||| ||||||| ||||||| ||| | ||||| ||| || Sbjct 53732 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGC 53673 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 | || | ||||||||||||||||| |||||||||| ||| ||| | |||||||| Sbjct 53672 GAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATA 53613 Query 10119 CCAATCATGCGGCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 ||||||| || || |||| | ||| | | || || | || | | || || || Sbjct 53612 CCAATCA-GCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC 53554 Query 10178 CTCGACGATGCTCTTTACCACG--TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGG 10235 | ||| ||| | |||| || || ||||||| | | ||||| || |||| Sbjct 53553 ACGAATGAT-CTCGTGTACACGGCTCTCTGG-CAGCTTGGTGACCAGCTTGGAGTACAAA 53496 Query 10236 AGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCC 10295 || | || | | ||| | ||||||||| || ||||||| |||||| || || | | Sbjct 53495 AGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTC 53436 Query 10296 AGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAAC 10355 |||||||||||||| || || || ||||| || |||| |||||| || || ||||| Sbjct 53435 AGACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAA- 53377 Query 10356 AGAAGA--CCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGC 10412 ||||| || ||||| ||| | | || | |||||||| | | ||||| | ||| Sbjct 53376 -GAAGATGCCTTCCACAGCAG-CGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGC 53319 Query 10413 GAAAAGTATTTC--GAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATA 10469 | | | | ||| ||||| |||||||| || |||||| ||||| || Sbjct 53318 GGGTCGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATG 53259 Query 10470 GCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAG 10529 || | ||| | || |||| || |||||| || | |||| |||||| ||| Sbjct 53258 GCACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAG 53199 Query 10530 TATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAG 10589 || ||| ||| | | ||||| || |||| | | ||||| ||| ||| | Sbjct 53198 TAGACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCG 53139 Query 10590 GGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTG 10649 || || ||||| | | ||||| || || |||||| |||| || || || ||| Sbjct 53138 GGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 53079 Query 10650 CCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCA 10709 |||| |||||| |||| | ||||||||||||||| ||||| | || | || || Sbjct 53078 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTT---G 53022 Query 10710 CGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACG 10769 | |||||| | || || || | || |||||| | |||||||| | ||| || Sbjct 53021 CTCCAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCG 52962 Query 10770 GCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAAC 10814 || |||||||||||||| | | ||| | | | | ||||||||| Sbjct 52961 GCTTTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAAC 52917 >seq4880 Length=46859 Score = 181 bits (200), Expect = 2e-40 Identities = 401/588 (68%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGC-TCAGGAGACTGGAGCATTTTCCACATTGCTTC 268269 ||||| |||| ||| || ||||| || | | | ||| |||||| |||||| ||| Sbjct 41308 CCAGTGGCAACCACGAAATCCTCGGGAGTGTCGTG-CTGTAGCATTCGCCACATACATTC 41250 Query 268270 GACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCA 268329 || ||||| || || |||||||| ||||||| ||||| | ||| || | |||||||| Sbjct 41249 CACGTAGTCTCGAGCGTGGCCCCAGTCGCGCTGGGCGTCGAGGTTGCCTATAAACAGGCA 41190 Query 268330 TTTCTGCTTGCCGAGCTTCACG-CGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACG 268388 ||| | || ||| | | || | | | ||||||||||| || || || || | Sbjct 41189 GCTCTCGATTCC-AGCGTGAATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAAG 41131 Query 268389 TCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCAT 268448 | || ||| |||| |||||||||||||| || || ||||| ||| |||| |||| Sbjct 41130 TTGGTCCGCGTCGAGGACTCTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCAT 41071 Query 268449 ATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAG 268508 | || || || | ||| || || |||| || ||||| |||||| || | || || | Sbjct 41070 AAGCTTCGCGATGGTTAACTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTG 41011 Query 268509 AACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGC 268567 ||||||||||||| || || || || | || || | || | ||||| ||| | | | Sbjct 41010 AACGTGGATGGAATGGTGT-GTTCTCATCCTGTGGTGTGGCTTGTACTTTACCATATAAC 40952 Query 268568 TCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCC 268627 ||| || || ||||||||||| | || | | ||||| || || |||| | || Sbjct 40951 TCGCTTGTAGACGCTTGGTAGAATCTCGTGGAATGCTCGAGGCCACATGTTCGCA-AGCT 40893 Query 268628 T-CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAA 268686 | ||||| || |||| || | | || || |||||||| || || | || ||||| Sbjct 40892 TGTGAGCAGGCGGAGAGCGCCTAAAGCGTCGACATCCGCTGTGTATTCGGCCAGTTCGAA 40833 Query 268687 TGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTG 268746 || || | || ||| | || |||||||| || || || || || || | Sbjct 40832 GGAGACTTTCACGTGGGACATTGCTCCCAGGTTGTACACTTCGTCTGGACGCACACGTGC 40773 Query 268747 CACGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 |||||||| ||| | || | ||| || ||||||||||||||||||| Sbjct 40772 CACGATCTGGCAC-AAATTGGATGAATCCGTGAGGTCTCCGTAGTGCA 40726 >seq3282 Length=26433 Score = 149 bits (164), Expect = 1e-30 Identities = 437/667 (66%), Gaps = 30/667 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||||| ||| || ||||| |||||| ||||||||||| Sbjct 16017 CGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGGTGCGACTCAATGTGGTGGAAAGCG 15958 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || ||||||||||| || | ||||| Sbjct 15957 TGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGACCACTGGTCGGC 15898 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | || || || || | |||||| ||||||| ||| || ||||| ||||| || | | Sbjct 15897 TCCACTTCACCCGTCAGCATCTTGATCAGCGTAGACTTACCGGCACCGTTGGGTCCCAGC 15838 Query 225161 ACGCCAATCCGGGATGACATTGCA-AC--CTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 || | || ||| || | ||| || | ||| | |||| | | || ||| Sbjct 15837 ACAGCGATACGGCTCGAAAGAGCACACGTCACAGAGATGTTGTTGATCGACGGCTTGGGG 15778 Query 225218 CCA-----GT-TTGGTAAGCAAA---GGCCACGCCACGCAGCTTCATGATGGCACGGTCC 225268 || || ||||| | | | || || ||| ||||||| || Sbjct 15777 GCACCCGGGTACTGGTACGAACAGTTGGTCA---AACG------AATGATGGGCTTACCC 15727 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTT---GGTCACCGCG 225325 ||| | || | | ||||| || ||||||||||| |||| | || ||| Sbjct 15726 TTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATGAACTTGACGTTCTCCG-- 15669 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || || |||||||| | ||||| || || ||||||| || ||||| Sbjct 15668 -ACTCGAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCCACGAACTTGGAGAGGTTA 15610 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCG 225445 || || || | ||||| || ||||||| |||| || | ||||| | Sbjct 15609 CCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATGATGTTGGTACACACGTTG 15553 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 || ||||||||||||||||| ||||| |||||||| | ||||||| ||||| | | ||| Sbjct 15552 TCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTAACGTTCGGCAGGCTCGTCAGG 15493 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | ||||| || ||||| |||| |||| |||||| || || || || |||||| Sbjct 15492 TAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTCGTGGGCTCATCAAGAAGC 15433 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 |||||||| || | | ||||| || | || ||| ||||| ||||| || || Sbjct 15432 AGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGTTTCATCTTCCAACCACCC 15373 Query 225626 GACAGGG 225632 || |||| Sbjct 15372 GAAAGGG 15366 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| || ||||| ||| | || ||||| ||| ||| || | ||| || | Sbjct 16573 GAATTCGTTGTGGTGAGTAATCATGACGACACCACCGTTGAACTCCTTGATGGCCGAAGC 16514 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 ||| || |||||||| |||||||||||| ||||||| |||||||| || | | | ||| Sbjct 16513 AAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTG 16454 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 ||| | |||||| || || | | ||| | ||||||||||||||| || || || || Sbjct 16453 CGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTGACCACCGGACAGACC 16394 Query 224617 GCGGATCCGCGAGTGAGT 224634 || || |||||||| || Sbjct 16393 ACGCATGCGCGAGTGGGT 16376 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225778 GTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATC-GGGGAAGCCCTCCAGCTGGC 225836 || ||| || ||| |||| ||| ||||| | || | |||||| ||||| ||||||| Sbjct 15223 GTTGTGCTCGACGAACACAGTCTTGAGCTCATC-GCGGCTGGGGAATCCCTCAAGCTGGC 15165 Query 225837 CATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGT 225896 | || | || ||||| | |||||| ||| || |||||||||||| || |||| Sbjct 15164 CGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACCGTTGGGACCGCACAGACCGT 15105 Query 225897 AATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGG 225956 || | | || ||||| | | || || | | |||||| || ||| | ||||| || | Sbjct 15104 AACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAGCAGAATCATACCACCGTAAG 15045 Query 225957 CAAGGGAGAACTCGCAATCGCACAGGTC 225984 |||| ||||||||||| | ||||||||| Sbjct 15044 CAAGCGAGAACTCGCAGTTGCACAGGTC 15017 >seq3030 Length=90490 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || || ||||| || |||||||| || || || Sbjct 71571 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 71630 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 71631 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 71690 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| ||||| || |||||| || ||| |||| | | || || Sbjct 71691 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 71750 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| || ||||| |||||||||||||| ||||||||| Sbjct 71751 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 71798 >seq2914 Length=83898 Score = 98.7 bits (108), Expect = 2e-15 Identities = 201/294 (68%), Gaps = 10/294 (3%) Strand=Plus/Plus Query 176241 GTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGT 176300 ||||||||||| | || | ||| |||||| || || || || || | ||| ||||| Sbjct 18219 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 18278 Query 176301 CCG--CGAGGA-AGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCG 176357 || || | | || ||| | |||||| || |||||| |||| || ||||| | Sbjct 18279 CCTGACGGGTACAGTAGCGGC---AGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTG 18335 Query 176358 ACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTAT 176417 || || | || | || || || ||||||||||| | | || |||||| ||| Sbjct 18336 ACAATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAA 18395 Query 176418 CCGGCAAACTGCGCGACTTTGATTT--CTTGTACGAGGTTGCGCTTCAACGCCGAGAACA 176475 || || | ||| || || || | || || ||| || ||||| || || | ||||| Sbjct 18396 CCAGCCAGCTGAGCCACCTTCACTTCACTCGTA--AGCTTGCGTTTTAAACAAGCGAACA 18453 Query 176476 GAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCT 176529 ||| ||||||||||||| || ||||||||||| ||||| || | || |||| Sbjct 18454 GAACCTTCCGCTGCGAGATTTTGAGACCATCGACCACCGATGGCAGCGATCGCT 18507 >seq4119 Length=9781 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || ||||| || || || |||| |||| ||| || || ||||| || |||||||| || Sbjct 9624 TAGTTTCCGCCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAG 9683 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || || | || || || | |||||| || ||||| || | | || ||||| Sbjct 9684 TCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCA 9743 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || || |||||||||||||| || |||||| |||||| Sbjct 9744 GGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGAC 9781 >seq4120 Length=3454 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || || |||||||||||||| || |||||| ||||||| ||||| | | Sbjct 5 TGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAG 64 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | || || |||| ||||| || || || || | |||||| ||||| |||||| Sbjct 65 TCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGC 124 Query 68460 AT 68461 || Sbjct 125 AT 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921544937637280