Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4691 288 2e-72 seq4771 237 3e-57 >seq4691 Length=143056 Score = 288 bits (318), Expect = 2e-72 Identities = 577/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || |||| |||||| || |||||| | ||||| | | ||| Sbjct 52948 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGAC 53007 Query 42369 ---ACGGCCGGCTGGGAG-TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || | | | || |||| | | || ||| | ||| |||| || | || Sbjct 53008 CTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACAC----TTCATCAAGCACGTGCT 53063 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||| |||||| || || || |||||| |||||| | |||| || Sbjct 53064 CGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAA 53123 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| ||||| || |||||||| ||||||||||| ||||| |||||| | Sbjct 53124 CGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 53183 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| ||| | |||||||| ||||||||||| ||| | ||||| Sbjct 53184 TCACTCGGAGGTCTACTC---ACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA 53240 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || || | ||||| ||||| || || || ||| ||||||||| ||||||| Sbjct 53241 GGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGC 53300 Query 42662 GCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGC---GAGAGGCTGGTAGCCTTTA 42717 ||||| ||| ||| |||| | | | | | | ||| | ||| | || || Sbjct 53301 ACTCAAGTGGTGCGA----CCCGCGTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCG 53356 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 | || || || |||||||||||||||||| | ||| ||||||||| ||||| ||| || Sbjct 53357 CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGC 53416 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||| || | |||||||||||| |||||||| | |||||||| || Sbjct 53417 GCGGCCTC-ATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATG 53475 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||| |||||||| ||| ||| | | ||| ||||| | || Sbjct 53476 CACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCA---CCAAGCTGCCAGAGAGC 53532 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | | ||||| || || |||| ||| ||| | ||||| | | ||| Sbjct 53533 CGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCG 53592 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || ||| ||| | || |||||| | |||||||||| ||||||| ||| ||| Sbjct 53593 CTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTG 53652 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 || |||| ||| || | | | | ||| | | ||||| || | | ||| || Sbjct 53653 GCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTT 53712 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | ||||| | | |||||||||||||||||||||||||| || | | Sbjct 53713 GACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGC 53772 Query 43137 GACTAC 43142 || ||| Sbjct 53773 GAGTAC 53778 >seq4771 Length=9300 Score = 237 bits (262), Expect = 3e-57 Identities = 909/1410 (64%), Gaps = 52/1410 (4%) Strand=Plus/Minus Query 244070 AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 ||| ||| | ||| | | |||| || | | ||||| || | || || || || | | Sbjct 4491 AGCTCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTG 4432 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 || | |||| || |||||||| ||| |||||||||| ||||| |||||| Sbjct 4431 TACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAG 4372 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAG 244248 || ||||||||||| | |||||||| ||| | | ||||| | |||| || Sbjct 4371 GCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTT---GATGACGTCA 4315 Query 244249 TCTG--AGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 ||| || || ||||| ||| | |||| ||| | || ||| |||||||||| Sbjct 4314 TCTTTTAGTGCGGCCCAGTTCCAAA-GCCC-AGATGAAG----GTGTGACGCCCCACATG 4261 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || ||||| | | ||||| ||| | || ||||| | | ||| ||| ||||| Sbjct 4260 TCGAACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAAT 4201 Query 244367 CGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| | || || | | || | ||| || ||||||| ||||||||||| | Sbjct 4200 TCCGTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTT 4142 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTC 244485 |||||||| || || || | || ||| | | | ||| | ||||| | || Sbjct 4141 CTTGTTCAATTCACGAGCTTGTGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATC 4082 Query 244486 GGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GC 244542 ||||| ||||| ||||| || || ||||| | || ||| ||||||| | || || Sbjct 4081 CGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGA---CTTGCGAGC 4025 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 || | || || ||| ||||| ||||||| |||||||| |||||||| ||||||| Sbjct 4024 CTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTT 3965 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 ||| || || ||| || ||||| || | || || ||| Sbjct 3964 GACCACCTCATACAGTCTCTTGTAGTCGAACACA-------CC---------GTTTTCC- 3922 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 |||||| || || || |||| |||||| || |||||||| || | || Sbjct 3921 -ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGT 3863 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| | | ||| ||| | ||| ||| | ||| || |||| || ||| || || Sbjct 3862 GTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTT 3803 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 |||||| ||| |||||||||||||||||||||||| | || ||||| | ||| || Sbjct 3802 CGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGC 3743 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 | | |||| | ||| || | | ||| |||| ||| | || || || || Sbjct 3742 GTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTT 3683 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 |||||| ||||| || || ||||| ||||||| ||||| || || || Sbjct 3682 CTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACC-AGGAG 3624 Query 244963 CGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | || ||| || | | |||||||| ||| | ||| || |||| ||||||||| | Sbjct 3623 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 3564 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | || | ||| || || | || | ||| | || | ||| || || ||||| Sbjct 3563 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 3504 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 | | ||| |||| || || || |||||| ||||||| ||||||| ||||| ||||| | Sbjct 3503 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 3444 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATG 245197 ||| ||||| || |||||||||| | | ||||| |||| || | Sbjct 3443 AGCCCTTGCGCTTACCTCCGCCCTGGTCCA----CATAGCGAGCCGTGTCGTTAAACACA 3388 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 |||| | || | |||||||||||| |||||| ||||| ||||||| | || Sbjct 3387 CGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTG 3328 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 | | || |||| || || || | ||||| || || ||||| |||||| Sbjct 3327 GCGCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCAT 3268 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | |||||| |||||||| || ||| || ||| | || ||||| Sbjct 3267 TGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAA 3208 Query 245378 GAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 || |||| ||| || | ||| | ||| | |||||| ||||| ||| ||||||| || || Sbjct 3207 GAAGACAACTGAGGACGTGGCG-TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAA 3149 Query 245437 GTAGCGGCT-CGAGAGGAACCCGTACGTCT 245465 | | | || ||| | || | ||||||||| Sbjct 3148 G-AACTTCTGCGACATGAGCTCGTACGTCT 3120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944259828290240