Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4771 237 2e-57 seq4691 158 1e-33 seq2914 95.1 1e-14 >seq4771 Length=9300 Score = 237 bits (262), Expect = 2e-57 Identities = 1088/1692 (64%), Gaps = 74/1692 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 4771 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 4712 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 113715 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 4711 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 4657 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| ||||| || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 4656 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 4598 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 4597 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 4538 Query 113836 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 4537 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 4480 Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 4479 AGATACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGAC 4420 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 4419 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 4360 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGGGCG 114070 ||||| | || || |||||||||||| | || | ||| ||| || || || ||| Sbjct 4359 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TGATGACGTCATCTTTTAGTGCG 4303 Query 114071 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 4302 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 4248 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGC--CAA 114180 |||| | ||| || || |||| || |||||||| || ||| | |||| ||| Sbjct 4247 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 4191 Query 114181 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 4190 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 4131 Query 114240 CCTTGGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGAC 114296 | || | || || || |||||| ||| || | || || ||||||| |||| Sbjct 4130 CACGAGCTT-GTGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGAC 4074 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CG 114355 | ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | Sbjct 4073 CCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACA 4015 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 |||||| | || ||||| ||| | || || || |||| ||||| | ||| Sbjct 4014 GGATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCA 3955 Query 114416 TGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 | || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 3954 TACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCAC 3902 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 ||||||| || ||||| | |||||| |||||||| || | ||| || Sbjct 3901 AGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCA 3842 Query 114535 CAAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 114591 || || |||| || || |||||||||| || || ||||| |||| || Sbjct 3841 TAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGC 3785 Query 114592 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 3784 GTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA 3725 Query 114652 GACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAG 114709 || | || | | | || | | || | | || |||| |||||||||| || Sbjct 3724 --CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 3667 Query 114710 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 114769 || ||||||||||| || ||| | ||| | || || || || | | || ||||| Sbjct 3666 AGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 3607 Query 114770 AGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCT 114829 | | ||| | ||| |||| || | |||||||||||| || || | ||| || || Sbjct 3606 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 3547 Query 114830 GAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 3546 TAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAA 3488 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 || | | || ||||||||||| |||| ||| | |||| || ||||| || || Sbjct 3487 CTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACC 3428 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 || |||||| ||||| | || ||| | ||||| || || | ||| || || || || Sbjct 3427 TCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCC 3368 Query 115006 ATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTG 115065 | ||| ||| || || || || || ||| |||| | || | || || Sbjct 3367 GTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACT 3308 Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 3307 GATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAAT 3248 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGG 115185 || || || |||||| ||| | || | |||||||| |||| || || | ||| Sbjct 3247 GCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGG 3188 Query 115186 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTAT 115244 || || ||||||||||| || || || ||||| |||| | || | || ||||| | Sbjct 3187 CGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCT 3129 Query 115245 CGTAGGTCTCCA 115256 |||| ||||||| Sbjct 3128 CGTACGTCTCCA 3117 >seq4691 Length=143056 Score = 158 bits (174), Expect = 1e-33 Identities = 395/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | | ||| | Sbjct 53784 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 53725 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 53724 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 53665 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 53664 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 53605 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | ||| | | |||||| |||| || || || | || Sbjct 53604 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 53546 Query 125991 TGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC---- 126045 | |||| | | | | ||| | | | | || |||| |||| | | Sbjct 53545 TCTCGTGTACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 53492 Query 126046 -GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 ||| || || ||| | ||||||||||| |||||| || |||||||||| ||| | Sbjct 53491 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 53432 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | ||| || || | || || || ||||||||||||| Sbjct 53431 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 53372 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCA 126223 | || |||||| ||||| || | || ||||| | ||||| | || | ||| Sbjct 53371 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 53313 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 53312 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 53253 Query 126284 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 53252 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 53206 >seq2914 Length=83898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 172778 GCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 172837 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 19158 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 19217 Query 172838 ACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 172889 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 19218 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 19269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597303392429920