Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4771 304 1e-77 >seq4771 Length=9300 Score = 304 bits (336), Expect = 1e-77 Identities = 883/1345 (66%), Gaps = 41/1345 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || |||||||| || || || || ||| ||||||| || ||||| Sbjct 3158 GCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTA 3217 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| ||||| ||| ||| | || || Sbjct 3218 TTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGT 3277 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| ||||| || ||||| |||||| | ||| || | || |||| | Sbjct 3278 ATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGC 3337 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| |||| |||||| | |||| ||| | || || || ||| Sbjct 3338 TACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAAC 3397 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | ||||| || ||||| |||| Sbjct 3398 GACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTAC 3457 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| |||||| | ||| | || ||||| ||||||||||| || Sbjct 3458 TTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAAT 3517 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | ||| | ||| | || ||||| || |||||||| || || || ||||| Sbjct 3518 GAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAG 3577 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || | |||||| | || |||||||| ||| ||| || |||| | Sbjct 3578 AGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTAC 3637 Query 94372 GACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || || | ||| | | ||||||| |||||| ||||| | | || | Sbjct 3638 GAGTGCTGGGGCGAT-GAG-TTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTG 3695 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || | ||| | |||||||| ||| | |||| ||| | |||| Sbjct 3696 CGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGA 3755 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| ||| | | ||||||| | | ||| |||||| ||||||||| || Sbjct 3756 CGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACT 3815 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || |||| | || | ||| ||| | | ||||| || || || || | Sbjct 3816 TGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCACCCGATG 3875 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACA 94669 || | || ||||| ||| ||| || | ||| | | || ||| || | || Sbjct 3876 AGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTG-GAAA-----AC- 3928 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG- 94728 | | |||||| || | ||| ||| | | || | | || || | Sbjct 3929 --------GGTGTGTTCGA-CTACAAGAGACTGT--ATGAGGTGGTCAAGGTGATCACGC 3977 Query 94729 --AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||||| |||| ||| |||||| |||| || || || | ||||| || || | Sbjct 3978 GCAACCTTAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAGTCCA 4037 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || ||||| ||||| || || |||||||||||| | ||||| ||| | | | | Sbjct 4038 ACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCA 4097 Query 94847 TGCGTCTGC-CCTACGACTCTGTCGAC--GCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 || || | | | ||| | | || || | ||||| |||||| ||||| | Sbjct 4098 TG-AACTACGCGTTCGA--GAGCCCACAAGCTCGTGAATTGAACAAGAACATCTTCGAGA 4154 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 || || | | |||||| | || | | | |||| |||| || || Sbjct 4155 CGATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCA---CGGAATTGGGTCCTT 4211 Query 94964 ACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| |||||| || || || | | | |||| || || ||||||||| | ||||| Sbjct 4212 ACGAGACGTTCCAGGGCTCTCCGGCCAGTA--AGGGTATCTTCCAGTTCGACATGTGGGG 4269 Query 95022 TGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACA 95078 || | | | || || || | |||||| || ||| | ||| || |||||||| Sbjct 4270 CGTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATCAAACA 4329 Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138 |||| | ||| ||||||| || || |||||||| || ||||||||||| |||||||| Sbjct 4330 CGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCT 4389 Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198 |||||||||||||| |||| || | ||| |||||| |||||||| | || || | || Sbjct 4390 GGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTTTTGGC 4449 Query 95199 CGGGGAATTCCCCGTCATCAACAAG 95223 || || ||| | || | |||||| Sbjct 4450 TGGTGAGTTCACGATCGTTAACAAG 4474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494681618515040