Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4691 134 1e-26 seq3030 116 4e-21 seq2928 96.9 3e-15 >seq4691 Length=143056 Score = 134 bits (148), Expect = 1e-26 Identities = 492/759 (65%), Gaps = 31/759 (4%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| | || |||||||| ||| || | ||||||| Sbjct 53036 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 53095 Query 52153 ACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || ||| | ||| | | || ||| || | || | || | |||||| | | || Sbjct 53096 ACGAGAACTTGGCCATGAACTTCA-GCAACGAA--GTGCAGGTGCCCGAGGCTCGTTGCT 53152 Query 52210 TTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTG 52269 | ||| || || | ||| ||| | | ||| ||||| | ||| |||||||||| Sbjct 53153 TCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTG 53212 Query 52270 AGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGC 52329 | | || || || | | |||| ||| || ||| ||| | ||| | | | Sbjct 53213 ACACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCC 53272 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA---GAGCGACACCGCCA 52386 | || || || |||||||| |||||| | |||||| ||| | | | || || Sbjct 53273 CTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCT 53332 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 | || ||||| || |||| ||||| || || ||| | || || || ||| | Sbjct 53333 ACCCGG---AGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTT 53389 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | ||||||||| | || | | ||| | |||||||| |||| ||| |||| Sbjct 53390 TCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 53449 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || ||||| || ||||||||||||| || ||||| | ||| | || Sbjct 53450 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 53509 Query 52567 GCGTGACCGAAAAATTG-----GATTCGG--ACACGATCCTGAGCATGTTCAAGGAGGCG 52619 || ||| || || || || |||||| || ||| || | | || Sbjct 53510 TGGTCACC---AAGCTGCCAGAGAGCCGTGTACACGA----GATCAT--TCGTG-ACGCT 53559 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 |||| || || | |||||| | | | |||| || || |||||| | || |||||| Sbjct 53560 GTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCTGATTGGTATGAAC 53619 Query 52680 GC-GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | || || |||||| ||||||| ||||| ||||| || |||||| | ||| || Sbjct 53620 TCTGCCCTC-ATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGG 53678 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | | ||| || | ||||| || || ||||| | ||| ||| || || || | Sbjct 53679 TGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCA 53738 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||| || |||||||| Sbjct 53739 AGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 53777 >seq3030 Length=90490 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 71571 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 71630 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| |||| |||||||| ||||| || || Sbjct 71631 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 71690 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||||| || || | |||| || | | |||| | || |||||| Sbjct 71691 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTG-TCAATGCTGTCCGACGGCTCCAC 71749 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || || || || || || || ||||||||||| Sbjct 71750 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 71797 >seq2928 Length=26498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 7277 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 7336 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 7337 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 7395 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||| | || |||||| |||| ||| | || || || |||| || || ||| Sbjct 7396 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 7455 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 7456 AAGATCTGCATG 7467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496220689145280