Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4771 219 5e-52 seq4691 176 6e-39 seq2914 86.0 8e-12 >seq4771 Length=9300 Score = 219 bits (242), Expect = 5e-52 Identities = 1085/1692 (64%), Gaps = 74/1692 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 4771 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 4712 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 115676 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 4711 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 4657 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 ||| || || || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 4656 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 4598 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 4597 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 4538 Query 115797 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 4537 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 4480 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || | ||| || || | |||||||| || | || | || ||||||| | Sbjct 4479 AGATACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGAC 4420 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 4419 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 4360 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CGT--TCCTTGAGGGCG 116031 ||||| | || || ||| |||||||| | ||| ||| || || || ||| Sbjct 4359 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TGATGACGTCATCTTTTAGTGCG 4303 Query 116032 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 4302 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 4248 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 116141 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 4247 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 4191 Query 116142 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 4190 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 4131 Query 116201 CCTTGGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACC 116258 | || | || || || |||||| | || | || || ||||||| ||||| Sbjct 4130 CACGAGCTT-GTGGGCTCTCGAACGCGT-AGTTCATGAGGATGAACGCATCCGCCAGACC 4073 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGG 116317 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 4072 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 4014 Query 116318 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 116377 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 4013 GATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCAT 3954 Query 116378 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 3953 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 3901 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 ||||||| || ||||| | |||||| |||||||| || | ||| || Sbjct 3900 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 3841 Query 116497 AAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 || || |||| || || |||||||||| || || ||||| |||| || Sbjct 3840 AAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCG 3784 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAT 116613 |||||||||||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 3783 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 3725 Query 116614 ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGA 116671 || | || | | | || | | || | | || |||| |||||||||| || | Sbjct 3724 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 3666 Query 116672 GGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730 | || |||||||| || ||| |||| ||| | || || || || | | |||||||| Sbjct 3665 GAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAAC 3607 Query 116731 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 | | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 3606 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 3547 Query 116791 GAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 | || | || || ||| || || ||| || || || ||||| |||| || Sbjct 3546 TAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAA 3488 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACG 116906 || | | || ||||||||||| |||| ||| | |||| || |||||||| || Sbjct 3487 CTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACC 3428 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || |||||| ||||| | ||||| ||||||| || || | ||| || || || || Sbjct 3427 TCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCC 3368 Query 116967 ATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026 | ||| ||| || || || || || || |||| | || | ||| || Sbjct 3367 GTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACT 3308 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 ||||| ||||| || ||||| || ||||| ||||| | | | || || |||| || Sbjct 3307 GATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAAT 3248 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 || || || |||||| ||| | || | |||||||| |||| || || | ||| Sbjct 3247 GCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGG 3188 Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTAT 117205 || || ||||||||||| || || || ||||| |||| | || | || ||||| | Sbjct 3187 CGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCT 3129 Query 117206 CGTAGGTCTCCA 117217 |||| ||||||| Sbjct 3128 CGTACGTCTCCA 3117 >seq4691 Length=143056 Score = 176 bits (194), Expect = 6e-39 Identities = 399/588 (68%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| ||||| || | ||| ||| | Sbjct 53784 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 53725 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 53724 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 53665 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 53664 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 53605 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | ||| | | |||||| ||||||| || || | || Sbjct 53604 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 53546 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-- 127520 | |||| | | | | | ||| | | | | || |||| |||| | | || Sbjct 53545 TCTCGTGTACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 53492 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 | || || ||| | ||||||||||| |||||| || |||||||||| ||||| Sbjct 53491 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 53432 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | |||||||| || |||||||| | ||| || || | || || ||||| |||||||||| Sbjct 53431 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 53372 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA 127696 | || |||||| ||||| || | || ||||| | ||||| | || | || Sbjct 53371 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 53313 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 53312 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 53253 Query 127757 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 53252 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 53206 >seq2914 Length=83898 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 176798 GCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCA 176857 || || || |||||| | || || || |||||||| |||||||| || || || ||| Sbjct 19158 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 19217 Query 176858 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 176909 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 19218 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 19269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613455634719840