Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4771 161 2e-34 >seq4771 Length=9300 Score = 161 bits (178), Expect = 2e-34 Identities = 415/621 (67%), Gaps = 21/621 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| |||||||| || |||| |||| || | | | || |||||||| Sbjct 4819 CTTGTCCACAGTGAACTGGATAGCGT---CGGCTTTCGGACGTCCGCGCATGTAGTACAT 4763 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | ||||||||| | ||| || || | | Sbjct 4762 GCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGT 4703 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||||| ||||| || ||| ||| ||| |||| || || | Sbjct 4702 CGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAG-CGCCACGGTCAG 4644 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | || | ||||||| |||||||||||||||||| || || | Sbjct 4643 CCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAA 4584 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | | || | || | || | ||| | |||||| || || | ||| || Sbjct 4583 CATCATCCGGAATGTCCT-TGACCTTCTGCACCGAGCCACCATCATTCA-GAATCTGAT- 4527 Query 204134 CTCGT--CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 ||| ||| | ||| ||||| | | ||| |||||| || ||| | ||| | Sbjct 4526 TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAA 4467 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| || || || | || || | ||| || ||| |||| ||| | || |||| Sbjct 4466 CGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGA 4407 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | |||||||| ||| ||| || |||||||| || | |||| Sbjct 4406 TAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCA 4347 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | ||||| || | ||||| ||| ||| || || | || ||||| | || | Sbjct 4346 GCGAGTTACGGAGACCGTGTTTGATGACGTCATCTTTTAGTGCGGCCCAGT--TCCAAAG 4289 Query 204372 CACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 | | | ||| | |||||||||||||||||||| ||||| || | |||| | || Sbjct 4288 CCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 4229 Query 204427 GCCCTTGTACGTCGGATAAGG 204447 ||||| | ||||| ||||| Sbjct 4228 GCCCTGGAACGTCTCGTAAGG 4208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795088367205440