Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5134 462 3e-125 seq1736 205 1e-47 seq6013 122 1e-22 seq4771 93.3 5e-14 >seq5134 Length=18240 Score = 462 bits (512), Expect = 3e-125 Identities = 1063/1586 (67%), Gaps = 25/1586 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||| || || ||||| || || || |||||| || || || | ||| Sbjct 13295 TTCATCTTGGTCCTTGTACTTCTCGGCGTCGGCGACCATGCGGTCGATCTCGGACTGCGA 13236 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | || || ||||| ||||| ||||| ||||| | || |||| | ||| || | Sbjct 13235 CAGTCGACCTTTATCGTTCGTGATCGTGATCTTGTTCTCCTTGCCCGTCGACTTCTCCAC 13176 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || |||||||| || || ||||||| |||||| | || | ||| || || Sbjct 13175 GGCCGAGACGTTCAAAATGCCGTTGACATCAACGTCGAACGTCACGTCAATCTGAGGCAC 13116 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | ||| || || ||||| | | || | || || | | |||||| Sbjct 13115 ACCGCGCGGCATGGGCGGGATACCGTCCAGGTTGAACTTGCCCAGAAGATGGTTATCACG 13056 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 || | | | ||||| || || | |||| || ||| | || || ||||| ||| Sbjct 13055 CGTCATGGTTCGTTCGCCCTCGAACACTTGGATCAGCACGCCCGGCTGGTTATCA-GTGT 12997 Query 6868 -CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 ||| ||||| | || ||||| | || | ||| || || | ||||| | | || Sbjct 12996 ACGTCGAGAACGTCTGCGTCTTCTTCGCAGGCACCGTAGTGTTGCGTGGAATGAGCTTGG 12937 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||||| ||||| || || | || | |||| |||| ||||||| |||| || Sbjct 12936 TCATAACTCCACCGGCCGTCTCCAAACCCAACGACAACGGTGCGACGTCCAGCAGTAGCA 12877 Query 6987 GGTCTTGAACAGATT---CGTTCCCT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||||| ||| || || | || | || | | || || || || ||||| || Sbjct 12876 GGTCTTG--CAGCTTGGACGATGACTCATTGCCACTCAGTATCGCCGCCTGCACCGTGGC 12819 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| ||||| || || || ||||| |||| || ||| || || ||||| || | Sbjct 12818 GCCGTACGCGACGGCTTCGTCCGGGTTGATCGACTTGAACAGATCCTTGCCGTTGAAGAA 12759 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 | || | || ||| || | |||||||| || |||||||| ||||||| ||||| || Sbjct 12758 ACCCATCAGCAATTGCTGCACCTTCGGGATGCGCGTCGATCCGCCGACCAGGACGATCTC 12699 Query 7162 ATTCACTTTCGATTTATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 | ||| | | || | || ||||||||| || | | |||| || ||||| Sbjct 12698 GTCCACCT--GGTTCTTGGACAGCTTTGAGTCACGCAAAACCTGCGCGACCGGCTCCATC 12641 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 || ||||| |||| | ||||| || ||||| || ||||| || |||| | | | Sbjct 12640 GTCTTGCGGAAATAGTCGCTGCACAGATCTTCAAACCGCGCACGCGTGATGGTCGAGTTG 12581 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | || || || ||| ||||| |||| | | || |||| | ||| ||| Sbjct 12580 AAATCGATACCATCCAGTAGCGAGTCAATCTCAAGGTACGCCTGCGCCGAAGTAGACAAC 12521 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| ||||| || |||||||| || | ||||| || |||||| |||| | | Sbjct 12520 GTCCGCTTGGCGCGTTCGCACGCCGTACGCAGGCGACGCAGCGCACGCTGGTTCACTGTC 12461 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 ||||| || | || || || || || | ||| | | | || | ||| Sbjct 12460 ATATCCTTGCGGTACTTGCGCTTGAATTCCTGTACGAAATATTCGACCAGACGGTTGTCG 12401 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || ||||| |||||||| || || ||||| ||||| ||||| || ||||| ||| || Sbjct 12400 AAGTCCTCACCTCCCAAGTGCGTGTCACCCGCTGTCGCCTTGACCTCGAAGATGCCTTCT 12341 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | || || ||||| ||||| || || || || || || || || ||||| Sbjct 12340 TCAATAGTGAGCAGAGAGACATCGAACGTTCCGCCGCCGAGATCGAAGATCAGCACGTTG 12281 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 || | |||| ||| || || || || ||||| || || ||||| || || || Sbjct 12280 TGCTCACCTCCTTT---CTTGTCCAGCCCATAGGCGATCGCAGCGGCCGTCGGCTCGTTG 12224 Query 7640 ATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| || ||| |||| |||||||||| | |||||||||| |||||||| || || Sbjct 12223 ATGATACGCAGCACA-TTCAAACCAGCAATAGCTCCCGCATCTTTAGTCGCTTGGCGCTG 12165 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 ||| ||||| ||||||||||||||||| || ||||||| | | || | || || | | Sbjct 12164 CGAGTCGTTGAAGTAGGCCGGGACCGTCACCACCGCGTTCTTCACATGTTTGCCAATGAA 12105 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | || || | ||| ||| ||| | | ||||| || |||||||| || | || Sbjct 12104 TGCCTCGGCCACCTCTCGCATCTTGATCAACACCATAGACGAAATCTCCTCCGGTTGGAA 12045 Query 7819 CTGTTTCGTTTCACCGTTAAAAT-CAACTTCAATCATG-GGTTTATCCGCAGCACCGGGG 7876 | |||| || || || || | || | || | || ||||| | | ||||||| | Sbjct 12044 CGTCTTCGACTCGCCCTTGAACTGCACCACCAGT--TGAGGTTTGTTCTCAGCACCACGA 11987 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | ||||| ||| ||| | || || || || || | | | || | ||||| | Sbjct 11986 ACTACCTTGAACGGCCAGTGCTTGATGTCCGACTGCACTTCTGGATCGGTGAACTTGCGC 11927 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| ||||||| || ||||| | | |||||| || |||||||| Sbjct 11926 CCGATCAACCGCTTGACATCAAACACCGTGTTGTGTGCGTTCATAGCCACCTGGTTCTTG 11867 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||||||||| || | || || ||||| |||||||| |||||||| Sbjct 11866 GCAGCATCGCCGATAAGACGCTC---CGTGTCGGTGAACGCCACGTACGACGGGGTCGTG 11810 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| || || || || ||||||||||| ||||| ||||| || ||| Sbjct 11809 CGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCCACACAC 11750 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || || || || || | |||||| || Sbjct 11749 GAGTAAGTCGTGCCCAGATCAATGCC 11724 >seq1736 Length=5520 Score = 205 bits (226), Expect = 1e-47 Identities = 427/632 (68%), Gaps = 13/632 (2%) Strand=Plus/Minus Query 6902 GTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGAC 6961 ||||| || | || ||| | || ||||| | ||||||| || || || || | ||| Sbjct 634 GTCGTGTTACGCGCAATCAGCGTCGTCATGACACCACCCGCCGTCTCCAGACCCAACGAC 575 Query 6962 AGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTT--- 7018 || || |||||||| | |||| |||||| || ||| ||| ||| | |||| Sbjct 574 AGCGGCGTCACGTCTAGCAGTAGCAGGTCCTG--CAGCTTC--TCCGACGAGTCGTTGCC 519 Query 7019 ----AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGT 7074 | ||| || || || ||||| || ||||| ||||| || || || ||||| || | Sbjct 518 GCTCAGGATAGCTGCCTGCACCGTGGCGCCGTACGCGACGGCTTCGTCCGGGTTGATGGA 459 Query 7075 TTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCG 7134 || || | || || ||||| || | ||||| | | || || | || ||||| || Sbjct 458 CTTGTTGGGCTCCTTGCCGTTGAAGAAGTCCGACAGAAGCTGCTGCACCTTGGGGATACG 399 Query 7135 TGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCG 7194 |||||||| || || | || | ||||| ||| | || | ||| | || || Sbjct 398 GGTCGATCCGCCCACGAGCACCACTTCATGCACCTGACCCTTGGACAGCTTGGCATCGCG 339 Query 7195 AAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAA 7254 || || || || || ||||| || ||||| |||| ||||| ||||| || Sbjct 338 TAGCACCTTCTCCACGGGCTCCATCGTCTTGCGGAAGTAGTCGGCGCACAGGTCCTCGAA 279 Query 7255 ACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAAT 7314 |||||| || || |||| | | ||| || |||||||| || | ||| || || || || Sbjct 278 ACGTGCGCGCGTGATGGTCGAGTTGAAGTCCACGCCGTCATACAGCGAGTCGATCTCGAT 219 Query 7315 GGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACG 7374 | | ||| |||| ||| || ||||| ||||| || |||||||||||||| || | ||| Sbjct 218 GTAGGCTTGAGCCGACGACGACAACGTACGCTTGGCACGCTCACACGCCGTACGCAGACG 159 Query 7375 ACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA 7434 ||| || || ||| |||| | | ||| || || || || || ||||| | | Sbjct 158 ACGTAGTGCGCGCTGGTTGTGCGTCAGATCCTTGCGGTGCTTGCGCTTGAACTCCTGCGT 99 Query 7435 GAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493 ||||| |||| | ||| | ||||| || |||||||||| ||| || || ||||| | Sbjct 98 GAAGTGGTCG-ACGAGGCGGTTGTCGAAGTCCTCACCACCCAGGTGCGTGTCACCCGCTG 40 Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 | ||||| || || ||||| ||| | |||||| Sbjct 39 TGGCTTTCACCTCGAAGATGCCTTCCTCAATG 8 Score = 194 bits (214), Expect = 2e-44 Identities = 323/466 (69%), Gaps = 3/466 (1%) Strand=Plus/Minus Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 || || || || || || || || ||||| ||||||||||| ||||| | ||| |||| | Sbjct 5518 TCCTTGGTGGCCTGGCGCTGTGAGTCGTTGAAGTAGGCCGGCACCGTGATGACGGCGTTC 5459 Query 7739 GTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGAT 7798 |||| | ||| |||| | | || || | || ||| ||| | || ||||| || Sbjct 5458 TTGACCTCCTTGCCGATGAAGGCCTCGGCCACCTCGCGCATCTTGATCAGCACCATAGAC 5399 Query 7799 GAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGT 7858 || |||||||| | | ||| || | ||||| || || | || ||| || Sbjct 5398 GAGATCTCTTCGGGCTGGAACGTCTTGCTCTCACCCTTGAACTGCACCGTGATCTGCGGC 5339 Query 7859 TTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT 7918 || || | | |||| | | ||| ||| ||| | || || ||| | || || Sbjct 5338 TTGTCGCCGGGGCCGGACGTGATCTTGAACGGCCAGTGCTTGATGTCGGCCTGCACGATC 5279 Query 7919 TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC 7978 ||||||| ||||| | ||||| |||||||| || ||||| || ||||| | |||| Sbjct 5278 GGGTCCGAGAACTTGCGGCCGATCAGACGCTTGGCGTCAAACACCGTGTTGGCTGCGTTC 5219 Query 7979 ATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCG 8038 ||||| |||||||| || ||||| ||||| || || || | | || ||||| Sbjct 5218 ATGGCAACCTGGTTCTTAGCAGCGTCACCGATGAGGCGCTCCGAGTCT---GTGAACGCC 5162 Query 8039 ACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTT 8098 |||||||| |||||||| || || || |||||||| || || || || ||||||||||| Sbjct 5161 ACGTACGACGGGGTCGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTC 5102 Query 8099 TGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 ||||| |||||||||||||| || || || || | ||||| |||| Sbjct 5101 TGCCACACGCCGACGCACGAGTAGGTCGTGCCAAGGTCAATGCCGA 5056 >seq6013 Length=37101 Score = 122 bits (134), Expect = 1e-22 Identities = 234/343 (68%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || ||||| || | | || || || ||||| ||||| || || | ||| Sbjct 17936 ATCGAAGTCCTCACCGCCAAGCAGCGTGTCACCGTTGGTCGACTTGACCTCGAACACACC 17995 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | | ||| ||||| || ||||| ||||||||||| || | | Sbjct 17996 GCCCGAGATCTCCAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAACACAGCAAT 18055 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || ||||| | |||| | || ||||| || | ||| || ||||| || || Sbjct 18056 GACCTTACCGTCGGCCTTGTCCATA------CCGTAGGCCAGAGCAGCAGCCGTAGGCTC 18109 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| || || ||| || ||||| | | || || || || || || || Sbjct 18110 GTTGATAATACGGAGCACGTCCAGACCGGCAATCTTACCGGCGTCCTTGGTAGCCTGACG 18169 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA- 7754 ||||| ||||| ||||||||||||||||| ||||| || | || || ||| |||| Sbjct 18170 CTGCGAGTCGTTGAAGTAGGCCGGGACCGTCACGACGGCCTGGGTCACAGGCTTGCCGAG 18229 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 || || | || ||| | || ||||| || || || ||||| || Sbjct 18230 GAAACCA-TCGGCGGTCTCCTTCATCTTAGTCAGCACCATGGA 18271 >seq4771 Length=9300 Score = 93.3 bits (102), Expect = 5e-14 Identities = 347/538 (64%), Gaps = 7/538 (1%) Strand=Plus/Minus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTA-CACGTCTGAAAGACCCTTTGC 105521 ||||| || || || ||| |||||||||| | || | ||| || | ||||| || Sbjct 3681 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCAC-TCGTACAGACCAGGAGC 3623 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 | | ||||| ||||| ||| || |||| || || || | |||||||| | ||| Sbjct 3622 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 3563 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGA-CACCTCGCCTCTTCATCACCTTGATTCA 105640 || | ||||| || |||| | ||| || | | || || ||| ||| || ||| Sbjct 3562 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCT-CATTACCGTGGTTCT 3504 Query 105641 AACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG 105700 ||| | || || || |||| | ||||||||||| || || || |||| || | | Sbjct 3503 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 3444 Query 105701 ACCCTTTACG---ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 | || || || || || | || | ||||| | || || |||| |||| || | Sbjct 3443 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 3384 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 |||| || ||||| || | || | || || || || || || | ||| | || | Sbjct 3383 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 3324 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877 | | | ||| | | || ||||| || ||||| ||| ||||| || || | | Sbjct 3323 GGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCT 3264 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 ||| || |||||||| || || ||| || |||| | || | ||||| || || | Sbjct 3263 TTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAG 3204 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 ||| || || | || || || || ||||| ||||| || || || || |||| || Sbjct 3203 ACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635079417088160