Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4771 257 2e-63 seq4691 111 2e-19 seq1651 100 4e-16 seq2914 98.7 1e-15 seq6281 96.9 4e-15 >seq4771 Length=9300 Score = 257 bits (284), Expect = 2e-63 Identities = 1156/1797 (64%), Gaps = 50/1797 (3%) Strand=Plus/Plus Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615 ||||||| |||||| |||||||| | || ||||| || |||| || | Sbjct 3000 TCAAGACGCTCGAGCGCGGCTACCTCTTCCGCGTGAATGGTAAGGTGGTGGAGCGGCCGC 3059 Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675 || | ||| | |||| || ||| | || ||||| | || || | || | ||| Sbjct 3060 AGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCACTGG 3119 Query 111676 AGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAAC 111734 |||| ||||| ||||| | | || | |||| ||||| || || || ||||||||| Sbjct 3120 AGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTCAAC 3178 Query 111735 GCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCA 111794 || || || ||| | || || |||| ||| ||||| | || | |||| || || Sbjct 3179 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTCT 3238 Query 111795 ATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGT 111854 || | |||||||||| ||| || | |||| ||| ||||| || ||||| || ||| Sbjct 3239 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 3298 Query 111855 ATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGT 111914 ||||| || || || | || | |||| || || | || || || || Sbjct 3299 ATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGGC 3358 Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974 || | || ||||| || ||| | || || ||||||| ||| || |||||||| || Sbjct 3359 TCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGAC 3418 Query 111975 CAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGAT 112031 || | || || |||||||| || |||| |||| | ||||| |||||||| || Sbjct 3419 CAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGAC 3478 Query 112032 ATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGAT 112091 | | |||||||| || ||||| ||||| ||| ||||| | || |||||| Sbjct 3479 GTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGCGCCCGCGAC 3538 Query 112092 CTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT 112151 | || | ||| || ||| | || |||||||||||||||||||| |||| | |||||| Sbjct 3539 TTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAG 3598 Query 112152 TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTT 112210 ||| | | || ||||| || | || || ||||| | ||| ||| | ||| || ||||| Sbjct 3599 TGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGATGAGTT 3657 Query 112211 TGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGC 112270 |||||| || || |||||||||| | ||| | || ||| | ||| | ||| Sbjct 3658 TGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACGCTCA 3717 Query 112271 CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTA 112330 | ||||| ||||| || | |||| | ||||| || || | ||||| || Sbjct 3718 GCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTA 3777 Query 112331 CAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC--- 112387 ||| ||||| ||||| ||| || || |||| |||||| |||| |||| Sbjct 3778 CAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC---CGTTCCAG 3834 Query 112388 CAACCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGTAACC 112446 |||| | || ||| || |||| | || | || |||||| ||| ||||| ||| Sbjct 3835 CAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGCAACT 3893 Query 112447 TCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAA 112506 | || || | || || || | || |||||| | || | || || || | | Sbjct 3894 TGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTACAAGA 3947 Query 112507 AACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATT 112566 ||| | || || || |||| ||||| |||| || || || || | Sbjct 3948 GACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTTAACAAGGTCATCGACGTCAACT 4007 Query 112567 TTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 112625 ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | || Sbjct 4008 ATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTATTGGC 4066 Query 112626 GTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA-TTCCGACGAAGC 112684 ||||| ||||| ||||||| ||||| || | |||| || || || || |||| Sbjct 4067 GTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCAC-AAGC 4125 Query 112685 GAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTC 112744 ||| | || | || || ||||| || || || || | ||| || Sbjct 4126 TCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTCGAT 4185 Query 112745 GGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CA 112801 |||| ||| || | ||| ||||| || || || || |||| ||||| || || | Sbjct 4186 GGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CAGTA 4241 Query 112802 AGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--ACTGG 112856 |||| ||| || || || ||||||| || | ||| | || || | ||||| Sbjct 4242 AGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAACTGG 4300 Query 112857 GACGCTCTCAAGGA--ACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 112913 | ||| || || || ||| ||||| | | ||||| |||||| || || | ||| Sbjct 4301 GCCGCACTAAAAGATGACGTCATCA---AACACGGTCTCCGTAACTCGCTGCTGGTTGCA 4357 Query 112914 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 112973 || ||||| ||||||||||| || || ||| |||| || || || | | || || ||| Sbjct 4358 CCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTAC 4417 Query 112974 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 113033 ||| | ||||| || | | | || || ||||| ||| || |||||| || Sbjct 4418 ACGTCCAACATGTACAACCGTCGTGTTTTGGCTGGTGAGTTCACGATCGTTAACAAGTAT 4477 Query 113034 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGG 113091 || || | || || | ||| | || | ||| | ||| || | | ||| || Sbjct 4478 CTGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTC 4535 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 |||| | ||||| || | || || | ||| ||||| ||||| ||||| || || Sbjct 4536 TGAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGT 4595 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || || ||||| |||||| ||||| ||| | ||| || | || || ||||| | Sbjct 4596 ACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-C 4654 Query 113212 GCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 113270 |||| || || ||||| |||| | ||| | || || || ||| Sbjct 4655 GCTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAG 4714 Query 113271 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 || | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 4715 CTGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 4771 >seq4691 Length=143056 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 53338 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 53397 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 53398 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 53457 Query 102300 TCTCGTGACGAGGG 102313 |||||||||||| Sbjct 53458 AGTCGTGACGAGGG 53471 >seq1651 Length=31538 Score = 100 bits (110), Expect = 4e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 25372 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 25429 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 25430 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 25489 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 25490 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 25549 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 25550 TACCAGGC 25557 >seq2914 Length=83898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||||| ||| | ||||||||| ||||| | || ||||| ||||||||||||||| Sbjct 19143 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 19202 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || || ||||| ||||| || | || || || || || || | ||||| ||||||||| Sbjct 19203 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 19262 Query 176996 TCTGTCA 177002 || |||| Sbjct 19263 TCCGTCA 19269 >seq6281 Length=24111 Score = 96.9 bits (106), Expect = 4e-15 Identities = 251/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| |||||| | |||| | |||||||||||||| ||| |||| ||| Sbjct 14221 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 14280 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCG-GAAACATCTTGATAGTCCT 176819 ||| | ||||||||| | | ||||| || |||| | | | | || | || | || Sbjct 14281 TGATCTGCCATGATCATCAAGTGGCCATAACGCAAGCCCTTGGTAGA-CTCG-TACTTCT 14338 Query 176820 TACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCT 176879 || | | ||||| | ||||| | || | || ||| | ||| || || Sbjct 14339 GGCCGTACTTGAGACCAAGAATCTTGACCACATTCTGGATCTCGTCGTTCTTCAGGATCT 14398 Query 176880 GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGT 176939 ||| | ||| |||||||| || ||| || | | ||||||||||| |||| Sbjct 14399 GTGAGTGGCTGGCTTCACGAACGTTGAGCATCTTACCTCTCAACGGGAAGACACCATAGT 14458 Query 176940 GATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTG 176999 ||| | ||||| |||| |||||| | || || | ||| || || ||||| ||||| | Sbjct 14459 AATCTCTGCCAACAACAGCGAGACCGCCCACGGCAACCGTCTTGGCGGAATCTCCCTCCG 14518 Query 177000 TCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 | | ||| || || || ||||| | || ||||| || | ||| ||||| |||| Sbjct 14519 TAAGGATCAGAGTGCAGTCCTTGC---TCTTCGCGGTACCAGCGTGGTTGGCATCGTCCA 14575 Query 177057 ATTTGGGAATACCAGT 177072 |||||| |||||||| Sbjct 14576 GTTTGGGGATACCAGT 14591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620690226601280