Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4771 248 1e-60 seq2455 152 6e-32 seq1651 123 3e-23 seq4691 102 1e-16 seq6281 87.8 2e-12 >seq4771 Length=9300 Score = 248 bits (274), Expect = 1e-60 Identities = 1079/1683 (64%), Gaps = 38/1683 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | || || Sbjct 4770 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTA 4711 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG-AATCGACC 109532 | ||||| | || | ||||| ||||||| ||| ||| || || || Sbjct 4710 CTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCG-CC 4652 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||| ||||||| || ||| | | | ||| || | || ||||| || ||||||||| Sbjct 4651 ACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 4592 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | ||| | |||||| ||||||||| || || || | ||||||||| | |||| || Sbjct 4591 CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAAT 4532 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 ||| | || || ||| | |||| || | || || | | |||| ||| Sbjct 4531 CTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTT 4472 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 ||| || | || |||||||| | || ||| ||| ||||| | |||||| || Sbjct 4471 GTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGACGTGTAAGG 4412 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 |||| | |||| |||||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 4411 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 4352 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA 109892 || || ||| |||||||| | | | || || | |||| |||| | | Sbjct 4351 CAGCAGCGAGTTACGGAGACCGTGTTTGATGACGTCATCTTTTAGTGCGGCCCAGTTCCA 4292 Query 109893 ACGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | | ||| || || | | || ||||||| || || | | ||||| | | Sbjct 4291 AAGCCCAG---ATGAAGGTGTGACGC-CCCACATGTCGAACTGGAAGATACCCTTACTGG 4236 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | ||||| |||| ||| ||||||| | ||| || ||| | ||| || | || Sbjct 4235 CCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATCGACGTCT 4176 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC 110071 | | || ||| || || ||||| || || | |||| |||| | | | Sbjct 4175 CCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGTGGGC 4116 Query 110072 AGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCA 110130 ||||| | | || || | || | ||| ||||||| |||||||| || || | |||| Sbjct 4115 TCTCGAACGCGTAGTTCATGAGGA-TGAACGCATCCGCCAGACCCTGGACGCCAATACCA 4057 Query 110131 ATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCG 110190 ||||| ||||| |||||| || ||||| | | || || ||| ||||| |||| Sbjct 4056 ATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCG 3997 Query 110191 ATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCG 110250 |||||| || || || ||| | ||| | |||| ||| | | ||| ||| Sbjct 3996 ATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCG 3937 Query 110251 AACGTTTTCGTCTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACAC 110309 ||| | || | || ||| | | || || || | |||||| | |||||||| Sbjct 3936 AACA-------CACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACAC 3884 Query 110310 AGAAGTCTCGTCTT-TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCT 110365 | ||| || || || |||| |||| | ||| || |||||| |||| Sbjct 3883 TGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGA 3825 Query 110366 TAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGT 110425 | | ||||||||||| ||| ||||| ||| ||| ||| ||||| ||||||||| Sbjct 3824 TCGT---ACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGA 3768 Query 110426 ATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGA 110485 | || || || || |||| | | || || || ||| || | || | | | Sbjct 3767 AGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA--CAGCTGCTGAGCGTT 3710 Query 110486 CAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 | ||| ||| || | ||||||| ||||||||| |||| | ||||| || | Sbjct 3709 GA-TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCAT 3651 Query 110543 GTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 || | ||| || | ||||| || | || ||||||||| | ||| || ||| Sbjct 3650 CGCCCCAGCAC-TCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCA 3592 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGG 110661 |||| || ||||||||||| || ||||| | ||||| ||| | || | ||| ||| Sbjct 3591 TTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGG 3532 Query 110662 CAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAG 110721 || | |||| ||| ||||| || || |||| || || | | || | | Sbjct 3531 GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCG 3472 Query 110722 TGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC-TGGTTAACA 110778 ||||| || || | |||| ||||| || ||||| || ||| |||| |||| ||| Sbjct 3471 TGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACA 3412 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 ||||| || ||| | || || || | | ||| || ||||| || | || || || Sbjct 3411 TAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTTAGAGGAGCCGTTC 3352 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 || || | || | ||| |||| || |||| ||| ||| ||||| ||||| ||| Sbjct 3351 GTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGCCC 3292 Query 110899 GCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT 110958 ||||| ||| || || || | | || || | ||||| || ||||| || || Sbjct 3291 GCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCA 3232 Query 110959 GCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018 ||| | || | ||| ||||||||||||| ||||||||| ||||| || || |||||| Sbjct 3231 TCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAG 3172 Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGC 111077 || ||||| || || || |||| | || | || ||||| | ||| || || ||||| Sbjct 3171 AGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTCCAGTGC 3113 Query 111078 GGA 111080 ||| Sbjct 3112 GGA 3110 >seq2455 Length=28671 Score = 152 bits (168), Expect = 6e-32 Identities = 292/424 (69%), Gaps = 25/424 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | || |||||||| | ||||| Sbjct 10389 ATCTGCCGGTCGAATCGACCGGGACGAAGGATAGCCTTGTCTAGAATATCAGCTCGGTTC 10330 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| || |||| | || ||| || ||||| || || Sbjct 10329 GTACCAGCGAGCACCACAACACC---CTCACTCGAGTTGAAGCCATCCATCTCGACCAGC 10273 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGC--CG 11665 |||||||| | || | ||||||||||||||| ||| | || ||| || Sbjct 10272 AGCTGGTTCAGAGTATTCTCACGCTCATCGTTGCCACCCGAGAAGTTTCCTT-TGCTTCG 10214 Query 11666 A--ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 | |||| | ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 10213 AGCACGCGCC------ACAGCATCAATCTCATCGATGAACACGATGCACGGAGCATTGGC 10160 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 ||| |||| | ||| || ||||| ||||| || || ||||| |||||||| |||| Sbjct 10159 ACGAGCCTCCTTGAACAGGTCACGCACACGAGACGGACCCACACCGACGAACATTTCAAT 10100 Query 11784 GAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||| | | | | | || ||||| ||| || || | | ||||||||| |||| || Sbjct 10099 GAAATCCGAGCCGGAAATGCTGAA-GAACGGGACGCTGGCCTCACCAGCTGTGGCCTTAG 10041 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | | || |||||||||||||| |||| ||| | || || || || ||||||||||| Sbjct 10040 CCAACAGCGTCTTACCCGTACCGGGTGGGCCAACAAGCAGAGCACCCTTGGGGATCTTGG 9981 Query 11903 CACC 11906 |||| Sbjct 9980 CACC 9977 >seq1651 Length=31538 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| ||||||||||||||||||||| | ||| |||||| || | | || | | || Sbjct 25366 CCGATAGCGTCAATCTCATCGATGAAGATGATGCACGGTGCCTTC-CGCTTGGCCGACTC 25424 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || || ||||||||| ||||||| |||| | || | Sbjct 25425 GAAGAGGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCC 25484 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 |||| | | | ||| || || || |||||||||||| || |||||||| || ||||| Sbjct 25485 AGAAGAATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTT 25544 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||||||||| | |||| Sbjct 25545 ACCCGTACCAGGCGGGCCAG 25564 >seq4691 Length=143056 Score = 102 bits (112), Expect = 1e-16 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| ||||||||| || ||||| || || |||||||| || | ||| Sbjct 53471 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 53412 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 |||||||||||||||| || ||| || || ||||||||||| |||||| |||||| Sbjct 53411 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 53352 Query 119634 GCGAATAGACGCTC--AGCAAAAGG-TCGAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 || | || ||||| | | ||| | | | |||| |||||||||| ||||||| Sbjct 53351 GCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGA 53292 Query 119691 GCCTT 119695 ||||| Sbjct 53291 GCCTT 53287 >seq6281 Length=24111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||| | | || || || ||||| | |||||| || || || | |||||| | || Sbjct 14430 CTTACCTCTCAACGGGAAGACACCATAGTAATCTCTGCCAACAACAGCGAGACCGCCCAC 14489 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT-- 168546 || | || || || ||||| ||||| || | ||| || || || | || || | Sbjct 14490 GGCAACCGTCTTGGCGGAATCTCCCTCCGTAAGGATCAGAGTGCAGT--CCTTGCTCTTC 14547 Query 168547 GCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 || |||||||| | ||| |||||||||| ||||||||||||||||| Sbjct 14548 GCGGTACCAGCGTGGTTGGCATCGTCCAGTTTGGGGATACCAGTGA 14593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588926496567200