Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4771 170 2e-37 seq4691 120 4e-22 seq2914 93.3 5e-14 seq1651 86.0 7e-12 >seq4771 Length=9300 Score = 170 bits (188), Expect = 2e-37 Identities = 674/1041 (65%), Gaps = 37/1041 (4%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 ||||||| ||||| || || || | |||||| || | || ||||| || ||||| || | Sbjct 4085 CATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAG 4026 Query 106338 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 | ||| |||| |||||| | || ||| ||||| ||| || || || | | | Sbjct 4025 CC-TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACC 3967 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTT 106455 || | |||| ||| | | || || || | || | ||| ||| || | Sbjct 3966 TTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACAT 3914 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || || || | || ||||| ||||| || ||| |||||| |||||||| | Sbjct 3913 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 3854 Query 106516 AATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | ||| || |||||| |||| ||||| ||||| |||| ||||| ||| Sbjct 3853 GACTTCGCAGCATAAGTTGCTGGAACGG---ATCGTACCCAAGTTCTGCTGGTTCGACTT 3797 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||| || ||||||||||||||| ||||| |||||||| |||| | | || Sbjct 3796 GCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAG 3737 Query 106633 AATTGCCTTCCACACATCGGCGGCTG---GTACAATGGCGTTGGCCC--GTCCCTCCGCC 106687 || || ||||| || |||| || | || | | || | |||| ||| | Sbjct 3736 GATAGCGAACCACA-----GCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTC 3682 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 ||||||||| || || ||||||||||| || ||| | || ||| | ||||| || || Sbjct 3681 TCGTACTTTTCATACAGAGCTTCAAACTCATCGCCC-CAGCACTCGTACAGACCAGGAGC 3623 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | || |||||||| | | ||| | ||| |||| || | ||||||||| || || Sbjct 3622 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 3563 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 || | |||||| | |||| | || | | | | || | || | ||| ||||| Sbjct 3562 AGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGC-TCATTACCGTGGTTCT 3504 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | || |||||||| | | || |||||||| ||||| | |||| |||| | Sbjct 3503 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 3444 Query 106926 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 | ||||| || || || | || | |||||||| || ||| ||||||| || || | Sbjct 3443 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 3384 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCT 107041 ||| || ||||| || | || || || || || || || || | ||| |||| Sbjct 3383 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCG 3325 Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | | || || || || ||||| || ||||| || ||||| || || | | Sbjct 3324 CGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 3265 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || | || || || | || ||||| |||| | || | ||||||||| Sbjct 3264 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAA 3205 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 |||| ||| || | ||| || || || |||||||| || || || ||||| |||| | | Sbjct 3204 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-A 3146 Query 107222 CCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 | | || ||||| ||||| ||||||| | || | ||||| | ||||||||| Sbjct 3145 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 3086 Query 107281 GATGGCCACACGCATAAACAT 107301 | || ||||||| || ||| Sbjct 3085 TAACGCTACACGCAGAATCAT 3065 >seq4691 Length=143056 Score = 120 bits (132), Expect = 4e-22 Identities = 379/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 53777 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATC 53718 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | ||| ||||| Sbjct 53717 CAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGG 53658 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||||||||||| | |||| ||||||||||||| || || | ||| Sbjct 53657 TCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACA 53598 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | ||| | | ||||||| | || || || | ||| |||| Sbjct 53597 -GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTG 53539 Query 117225 GATA-GTTTCGGTAGTGGGTCTATTAC--GCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | | || | | | | | || || | | || || || ||| || || Sbjct 53538 TACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGG--CA-GGCGAAGTC 53482 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 | ||| | ||||| || || || || || || ||||||| || || |||||||| Sbjct 53481 CGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAG 53422 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || |||||||| | |||| | || | |||||| || || ||||||||||| || ||||| Sbjct 53421 GCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCAC 53362 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTTCA 117460 | || || || | |||||||| | | ||||| || || | ||| |||| || | Sbjct 53361 AGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCGCACCACTTGA 53303 Query 117461 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 117520 |||||| | ||||||||| | ||| || | || | ||||| | | || | Sbjct 53302 GTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGT 53243 Query 117521 TCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 117554 ||| || |||| | ||||| ||||| ||||||| Sbjct 53242 CCTTCTC-GATCGCGTCCTTGATGTACGTGTCAAT 53209 >seq2914 Length=83898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 169326 AGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCA 169385 |||||||| || | || || || ||||| | || ||||| ||||| ||||| || Sbjct 19143 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 19202 Query 169386 TAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCC 169445 || || || ||||||||||||| || || || || ||||| | ||||||||||||||| Sbjct 19203 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 19262 Query 169446 TCCGTGACAAT 169456 ||||| | ||| Sbjct 19263 TCCGTCAAAAT 19273 >seq1651 Length=31538 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC--GGGCGATTTCAAAGA 9429 || ||||||||||| ||||||| || || ||| | || ||| || ||| | | |||| Sbjct 25372 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 25429 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 | || || || | |||||||||||| || ||||||| | || | || | ||| Sbjct 25430 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 25489 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 25490 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 25549 Query 9550 TACCTGGC 9557 |||| ||| Sbjct 25550 TACCAGGC 25557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589931212113760