Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3030 138 3e-27 seq2928 114 3e-20 seq4119 98.7 2e-15 seq4120 95.1 3e-14 seq4771 87.8 4e-12 >seq3030 Length=90490 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | ||||| | || || ||| Sbjct 71589 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCG 71648 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || || || ||||| ||| Sbjct 71649 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGA 71708 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||||| || |||||| ||||||| ||||| || || || | ||||| Sbjct 71709 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 71768 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | || || ||||| | ||||||| Sbjct 71769 CCCGTAAGGGTCTTGACGAAAATCTGCATTT 71799 >seq2928 Length=26498 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 7279 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 7338 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || || || || ||||| || ||||| |||||||| || ||| Sbjct 7339 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7398 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| ||||||| ||||| || || || | ||||| || ||||| || || || || Sbjct 7399 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 7458 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 7459 ATCTGCAT 7466 >seq4119 Length=9781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| ||||| || || || ||||| || || || | || || || Sbjct 9648 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCC 9707 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || |||||||| ||||| || Sbjct 9708 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 9767 Query 195052 ATTTTTTGCTTGAC 195065 || ||||||||||| Sbjct 9768 ATCTTTTGCTTGAC 9781 >seq4120 Length=3454 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || || ||||| || || |||||||| ||||| || || |||||||||||||| || || Sbjct 2 CGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATC 61 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 | ||||||| ||||| || || || | |||||| || ||||| || || ||||| | Sbjct 62 GAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATC 121 Query 195136 TGCAT 195140 ||||| Sbjct 122 TGCAT 126 >seq4771 Length=9300 Score = 87.8 bits (96), Expect = 4e-12 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 160610 GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAA 160669 ||||| ||||||||||||||| | | |||||| | ||||| | ||||||||||| ||| Sbjct 3563 GATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAA 3622 Query 160670 GCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAA 160729 || ||||| || | || | || ||||| || |||| ||||||| ||||| Sbjct 3623 GCTCCTGGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAG 3682 Query 160730 AAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCAC-ATCCTTGT 160788 || || ||| | || ||| | || || || | |||||| || | ||||| | Sbjct 3683 AAGGAAGGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGG-TTCGCTATCCTAGA 3741 Query 160789 CGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCT-GTCGCAAGA 160847 ||| || | ||| ||| ||||||| || |||||||| | || || |||||| Sbjct 3742 CGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACG-CAGCTAACCGCAAGT 3800 Query 160848 GTAACCAGAAGAACTTTGG 160866 |||||| ||||||| || Sbjct 3801 CGAACCAGCAGAACTTGGG 3819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109386016773308