Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2482 161 8e-35 >seq2482 Length=72606 Score = 161 bits (178), Expect = 8e-35 Identities = 403/604 (67%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| || |||||||| || | |||||| ||||| ||||| || | | |||| Sbjct 72211 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATGACGTGG 72152 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29908 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 72151 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 72094 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 72093 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 72034 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||| | || |||| | ||||| ||||| || | ||||||| || || || |||| Sbjct 72033 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 71974 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | | || |||||||| || ||| | || | | ||| || || Sbjct 71973 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCTTCGGTCAGTAGGATTCG 71914 Query 30089 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 71913 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 71858 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 71857 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 71798 Query 30205 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30264 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 71797 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 71738 Query 30265 GCGTCCCAGATCTTTACCCCCTTCT--CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||||||| || | | | |||| | |||| | || ||||| || || | Sbjct 71737 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAG--TGTGGGCACTTGTGTCTCCACTAA 71680 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 30382 |||||||| |||||||| | || | ||| || |||| |||||||| || | | Sbjct 71679 TAAACCACAGTAGCTCCTCAGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAATG 71620 Query 30383 GAAA 30386 |||| Sbjct 71619 GAAA 71616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408584114298452