Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4771 244 2e-59 seq4691 206 5e-48 >seq4771 Length=9300 Score = 244 bits (270), Expect = 2e-59 Identities = 692/1048 (66%), Gaps = 44/1048 (4%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||||| |||||||| ||||||||| ||||| ||||| || ||| Sbjct 4432 GTACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGA 4373 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-C 213066 |||||| |||||||| || ||||| || ||| | | ||||| | | |||| | | Sbjct 4372 GGCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTG---ATGACGTC 4316 Query 213067 GCCGA--AGCTCTGCCCAGTCCCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCAC 213122 | || | ||||||| ||| ||||| |||| | ||| |||| Sbjct 4315 ATCTTTTAGTGCGGCCCAGTTCCAAAGCCCAGATGAAGGTG--------TGACGCCCCAC 4264 Query 213123 ATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCA 213182 ||||| ||||| ||||| || || || | || ||||||| | | ||| || || Sbjct 4263 ATGTCGAACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC 4204 Query 213183 TGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATC 213242 ||| |||| | ||| |||| || || |||||| ||||||| || || || || Sbjct 4203 AATTCCGTGGCAATCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATG 4144 Query 213243 TCCCTGTTGAGCTTCTTG-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACAC 213301 | | |||| | ||| | || | |||| | ||| | ||||| | |||| | Sbjct 4143 TTCTTGTTCAA-TTCACGAGCTTGTGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGC 4085 Query 213302 ATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGC 213360 ||| ||||| |||||||| || || || ||||| | || | || ||| |||||| |||| Sbjct 4084 ATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC 4025 Query 213361 ACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTT 213420 ||| | | || ||| ||||| |||||||| |||||| |||||||| ||| ||| | Sbjct 4024 -CTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCT 3966 Query 213421 TGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAG 213480 || || | ||| || || | |||||| |||| | ||||||| || Sbjct 3965 TGACCACCTCATACAGTCTCTTGTAGTCGAACACA------CCGTTTTCCACAAACATAG 3912 Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATG 213539 |||| || | |||| |||||| || |||||||| | | | | | |||||||||||| Sbjct 3911 GCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGAC-GTGTACTCCATG 3853 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 | ||| ||| | ||||||| | ||||| || |||| |||||| ||||| ||||| | Sbjct 3852 ACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCGG 3793 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 || || | ||||||||||||||| |||| || ||||| | ||| | | || || Sbjct 3792 TTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATA 3733 Query 213660 TGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGT 213717 | ||| || | | || |||| | || || || | | | | | ||||| Sbjct 3732 GCGAACCACAGCTGCTGAGCGTTGA----TTGTCTTAC-GCGCACGTCCTTCCTTCTCGT 3678 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATG 213777 ||| ||| || || | | || || | ||||||| | || ||| || ||| | | Sbjct 3677 ACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGA---GCTT 3621 Query 213778 C---GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 | |||||| | | ||||| | || | | ||||||| |||||| || || | Sbjct 3620 CGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAG 3561 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 | |||||||||||| |||| ||| | || | | || || ||| || | Sbjct 3560 GCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTAC 3501 Query 213895 GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGC 213954 ||||||| || || || || | ||| |||||||||||||||| |||||| || || | || Sbjct 3500 GCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGC 3441 Query 213955 CCGGCCTCTT---GCCGCCCTGGTCCAC 213979 || | ||| |||||||||||||| Sbjct 3440 CCTTGCGCTTACCTCCGCCCTGGTCCAC 3413 >seq4691 Length=143056 Score = 206 bits (228), Expect = 5e-48 Identities = 484/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || || ||| |||| ||||| | ||||||||| |||||| || || Sbjct 53666 AGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATC 53607 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| || | | | | |||||| | ||| ||| ||| || || | | Sbjct 53606 AGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATG 53547 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | || ||| ||||| | ||| || ||| ||||| || | | |||| Sbjct 53546 ATCTCGTGTACACGGCTCTCTGGCAGCTTGGTGACCAG---CTTGGAGTACAAAAGGCAG 53490 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| || ||||||||| |||| ||||||| ||||| Sbjct 53489 GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCG 53430 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||| || || | ||||||||| |||||||||||| Sbjct 53429 GGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 53370 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGAT 48312 || ||||| || ||||| || || | ||| | | || || | | | | | Sbjct 53369 CCTTCCACAGCAGCGAAAGCCAGCAGGCGCTC-CGGGTAGGAGGATACACGCGGGTCGCA 53311 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||||| ||||||||| ||| || || || ||||| ||||| || | Sbjct 53310 CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAG 53251 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | ||| |||||| | || || | ||||||| || ||| | Sbjct 53250 GAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAG---TGAGTAGAC 53194 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| || |||||| | ||||| ||| Sbjct 53193 CTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCAC 53134 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| || ||| || || ||||| || || || || || || || Sbjct 53133 CTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGC 53074 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || || | ||| || |||||||||| ||||| ||||| | Sbjct 53073 GAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTC 53014 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | ||||| | || || | ||||||||||| || ||||| || Sbjct 53013 CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTT 52954 Query 48670 GTACAT 48675 |||||| Sbjct 52953 GTACAT 52948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931454504668160