Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4771 145 9e-30 seq4691 120 4e-22 seq6281 82.4 9e-11 >seq4771 Length=9300 Score = 145 bits (160), Expect = 9e-30 Identities = 673/1047 (64%), Gaps = 31/1047 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | |||| || || | ||||||||| | ||||| | || | Sbjct 3056 CCGCAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCA 3115 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || ||||| Sbjct 3116 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTT 3174 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || ||| | || ||| |||| ||||||||| | || | |||| || Sbjct 3175 CAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGA 3234 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || || || | || || | | | || || ||||| || ||||| || Sbjct 3235 CTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGG 3294 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 ||||| || || || || | | | |||| ||| | || || || || || | Sbjct 3295 CGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGA 3353 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || ||||| || ||| | || || ||||||| ||| || ||||||| Sbjct 3354 ACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATG 3413 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || |||| |||||||||| || ||||| | Sbjct 3414 TGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACG 3473 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| ||| | || | || | | | Sbjct 3474 CCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA-GCTGCACCGCGCC 3532 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || | |||| | |||||| | || || || ||||||||| | || |||| | Sbjct 3533 CGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAAT 3592 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 || | ||| | | |||||||| || | || || ||||| | ||| || | ||| || Sbjct 3593 GGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGCTG-GGGCGA 3651 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC--TGTA 75862 ||||||||||| || || |||||| || |||| || | || | ||| | | Sbjct 3652 TGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAA 3711 Query 75863 CCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 | | || | || ||| ||||| || | | |||| ||||| ||| || | Sbjct 3712 CGCTCAGCAGCTG--TGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTC 3769 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||| |||||||| || |||| ||| ||||| |||| ||||| || ||| Sbjct 3770 ATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTTGGGTACGATC--- 3826 Query 75983 AGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 | || | | ||| ||| ||| | | |||||||| |||||| ||| || Sbjct 3827 CGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCACCCGATGAGGTGGCAGTG 3886 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT-TTTGA 76098 ||||| ||||| || | || || || | || ||| ||| | || | || || Sbjct 3887 TGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGT---GGAAAA----CGGTGTGTTCGA 3939 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || | | ||| |||| | ||| | | || || || ||| ||||| || Sbjct 3940 CTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTTAACAAGGTCATCGA 3999 Query 76159 CAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 | || | |||||| |||| ||| || || ||||| || ||||| || | || |||| Sbjct 4000 CGTCAACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTG 4058 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATG 76244 || | || || || ||||| ||||||| Sbjct 4059 GTATTGGCGTCCAGGGTCTGGCGGATG 4085 >seq4691 Length=143056 Score = 120 bits (132), Expect = 4e-22 Identities = 379/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||||||| ||||| ||||| | |||| || ||| | || | | ||||| | || Sbjct 53209 ATTGACACGTACATCAAGGACGCGATC-GAGAAGGACCATCTCCTGCGTGCCATTGAGAC 53267 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTC 65065 | || ||| | ||||||||| | |||||| | || |||| ||| | || || Sbjct 53268 CATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATC 53327 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||| | | |||||||| | || || || |||||| || ||||||||||| || | Sbjct 53328 -CTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 53386 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | |||| | |||||||| || |||||||| || || ||||||| | Sbjct 53387 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 53446 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | || || || || || ||||| | ||| ||| || ||| || || || | Sbjct 53447 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCC-TG--CCTTTTGTACT 53503 Query 65246 CTTTGC--GTAATAGACCCACTACCGAAAC-TATCCACGCCATCGTGAAAGAGGCGGTTG 65302 | || || | | | | | || | | | |||| ||| | || || || | Sbjct 53504 CCAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGG 53563 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCT 65361 ||||||| | | ||| | ||| | ||||| ||| | || || |||||||||||| Sbjct 53564 TGATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCT 53622 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 | |||| | |||||||||||| ||| | || ||||| ||| | |||| ||| Sbjct 53623 GCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTG 53682 Query 65422 CCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | || | |||| ||||| || ||||||| ||||| | || || | || Sbjct 53683 TCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 53742 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| || |||||||| || || || || Sbjct 53743 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 53777 >seq6281 Length=24111 Score = 82.4 bits (90), Expect = 9e-11 Identities = 234/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||||||||| |||| | || || | || | ||||| ||||| || ||||| | Sbjct 13558 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13499 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 || || | || || || |||| | |||| | || |||||||| || Sbjct 13498 AGTCTACAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13439 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 || || ||| |||||| || ||||||||||| ||||||||||| || | | ||| Sbjct 13438 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGACTCGGC-CAG 13380 Query 14612 -ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGATCCTCGGGA 14670 | | || |||||||| || || || ||||| |||| |||||| ||| Sbjct 13379 TGCTCGTTATATTTTCACCAACCTAGAGCAGCTTACTCGCCGTATCTACGATCCTTTGGA 13320 Query 14671 TGACCCGAT--CCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTTAC 14728 | |||| || || || || | || || || | ||||| || || || | ||| Sbjct 13319 CAA--CGATTGTCTGAAGTATCTGAATGAAGACGGCCAGTCCATCGAGCCGGAATGGTAC 13262 Query 14729 ATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || |||| | | || ||||| |||||||| || | || |||||||| ||||||| Sbjct 13261 ATCCCAATTATCCCCATGGTGCTCGTGAACGGCAGTGACGGTATCGGAACGGGTT 13207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596519458325120