Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq792 136 1e-26 seq222 107 6e-18 seq3282 89.7 2e-12 seq3171 84.2 6e-11 >seq792 Length=16111 Score = 136 bits (150), Expect = 1e-26 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| | | |||| | |||||| ||||| | |||||||| || || ||||| Sbjct 8887 ATCATAGCGAGTCATGACCGATTCCATTGCCTTGACAAGTCGACGCTGGATGTATCCAGT 8828 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 8827 CTCGGCCGTCTTCACAGCTGTATCAATCAGACCTTCACGACCACCCATAGCGTGGAAGAA 8768 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||||| ||| ||| | ||| | | ||| | || ||||||||||| ||||| Sbjct 8767 AAACTCTTGCGG-CGTCAAACCCTTCAGGTACGAGTTTTCCACGAAACCACGACTCTCGG 8709 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | ||| |||| | |||||||||| || | | | | ||||| ||||| | Sbjct 8708 GACCCAGGTCATCCTTGCCATAGTGTGGCAGTGTACGATGGTTGAAACCGTACGGGATTC 8649 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || |||||||||||||| |||| || | || ||||| || ||||| Sbjct 8648 GCTTACCTTCAACGTTCTGCTGACCCACACAAGCGATAATCTGGGAGATATT 8597 >seq222 Length=40609 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||| || ||| ||||| || || | || || || || | || |||| Sbjct 11696 GCGATGATACCGCAGATATCGCACACGTGCACACGATACGCGTCCGAGTTGGCAAATAGT 11637 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 ||| || || |||| | | ||||| || |||| |||||| ||||||||||| || Sbjct 11636 CGATCCATGAGGAAGTTGGCCGAGCCGTGGGAGATCAGACAATCGCGCTCCATTTCTCCC 11577 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 | || |||||||| || ||||| | ||| || |||||||| || | | || | Sbjct 11576 ATTCGCAGACCACCTTCACGAGCACGACCTTCCATGGGCTGACGCGTCAACATCGTCACA 11517 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || || || |||||| | ||||||||||| |||||||||||||| Sbjct 11516 GGACCACGAGAACGCGAGTGGATCTTATCGTCGACCATATGCTTCAGACGCTGGTAGAAC 11457 Query 251644 GCGGGACCGATGAAGAT 251660 | ||| || |||||||| Sbjct 11456 GTGGGTCCAATGAAGAT 11440 >seq3282 Length=26433 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 16528 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 16469 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 16468 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTG 16409 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 16408 ACCACCGGACAG 16397 >seq3171 Length=12737 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 7729 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 7787 Query 410554 T-GGGTAAtttttttAATTT 410572 | | |||||| ||| | ||| Sbjct 7788 TCGCGTAATTCTTTGATTTT 7807 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/73 (88%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||| Sbjct 12335 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCC-TCG 12277 Query 410554 T-GGGTAAttttt 410565 | | ||||||||| Sbjct 12276 TCGCGTAATTTTT 12264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471690801073988