Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4691 185 1e-40 seq4771 145 9e-29 seq1987 134 2e-25 seq4784 127 2e-23 seq288 122 1e-21 seq3266 116 5e-20 >seq4691 Length=143056 Score = 185 bits (204), Expect = 1e-40 Identities = 222/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| ||||||||||||||||| || ||| | |||| | ||| | Sbjct 53191 CCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCT 53132 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || |||| ||||| ||||||| |||||| ||||| ||||| |||| Sbjct 53131 GCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGCGA 53072 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||||| ||| ||||| ||||| Sbjct 53071 AGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTCCT 53012 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| || | ||||| | |||||| || ||||||| ||||||||||| || ||| Sbjct 53011 TGAGGTCGTGCAC-AAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTG 52953 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||||| ||| |||| || | | || ||||| || || || ||||||||||| || Sbjct 52952 TACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGTTCTC 52894 Score = 179 bits (198), Expect = 5e-39 Identities = 234/316 (74%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| |||||||||||| ||| ||||||||||||||||||||| | ||| |||||| Sbjct 53786 GCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATC 53727 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTT-CGCATCCGAGCGACGC 868809 | |||||||| || ||||| | | |||| ||| | || || ||||| Sbjct 53726 ATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACA-CCAAGCGAGTA 53668 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||| ||||| || || ||||| |||||||||||||||||| | | |||||| || || Sbjct 53667 GAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAAT 53608 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-A 868928 ||| |||| || ||||| || | ||||||||| | ||| ||| | || || || ||| | Sbjct 53607 CAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC-ACGAA 53549 Query 868929 TGATCTGCCTGGGCACGTC-GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||||| | || |||| | | | ||||| |||| ||| | | ||| | |||||| Sbjct 53548 TGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGGCAG 53490 Query 868988 GCAAAGTCGCAGTGCA 869003 || ||||| ||||| Sbjct 53489 GCGAAGTCCGTGTGCA 53474 Score = 150 bits (166), Expect = 2e-30 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| |||||||| | ||||| ||| || ||||||||||||||||||||| Sbjct 53471 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 53412 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||||||||||| ||||||| ||||||||| |||||||| || || || || ||| Sbjct 53411 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 53352 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || ||||| | ||| | || | | | || | |||||| | ||||| Sbjct 53351 GCC-AGCAGGCGCTCCGGGTAGGAG--GATACAC-GCGGGTCGCACCACTTGAGTGCCCA 53296 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| | || | || | || || ||||| || | ||| |||||||| || Sbjct 53295 GTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTC 53236 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || |||||||| || ||||| || || || || ||| |||| Sbjct 53235 GATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCC 53190 >seq4771 Length=9300 Score = 145 bits (160), Expect = 9e-29 Identities = 214/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || ||||| |||||||||||||| || || | |||||| | | |||||| Sbjct 3424 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATAATGCCGTT 3365 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 3364 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 3305 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| ||||| ||| | || ||||| ||||| || || || |||||||| ||||| Sbjct 3304 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 3245 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||||| ||| ||| ||| || ||||| || || || || | | ||| Sbjct 3244 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGT 3185 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||||||||||||| || || || || ||||| |||| | |||||||| ||||| Sbjct 3184 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 3125 Query 1630362 GGT 1630364 || Sbjct 3124 CGT 3122 Score = 134 bits (148), Expect = 2e-25 Identities = 269/406 (66%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 1628198 TCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGG 1628257 ||||||||| |||||||||||| | | |||| | |||||||||| ||||||| ||| Sbjct 3824 TCGTACCCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGG 3765 Query 1628258 GCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGA 1628317 || | || ||||| ||||| || | | ||| || |||| | ||| | ||| || Sbjct 3764 GCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTT---GA 3708 Query 1628318 CAGTC---CGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGC 1628374 ||| ||||| || || | ||||| | ||| Sbjct 3707 TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGC 3648 Query 1628375 CGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGG 1628434 | ||||||||| ||| || || || ||| ||||| || | ||| | |||| || Sbjct 3647 CCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGG 3588 Query 1628435 TCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCC 1628494 | || | | ||| ||||| ||| | |||||| |||||||| | |||||| || | Sbjct 3587 CCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGC 3528 Query 1628495 GGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCC 1628554 ||| | ||| || ||||||||||| || || || | |||| | ||||||||||| Sbjct 3527 GGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCC 3468 Query 1628555 ACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||||||| |||| || || | |||||||||||| || ||||| Sbjct 3467 ACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCC 3422 >seq1987 Length=94828 Score = 134 bits (148), Expect = 2e-25 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || |||||||| |||||||||||||| || | ||| Sbjct 74869 GCCAGCTCACCGGGGAGCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTC 74928 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | | ||||||| |||| |||||| Sbjct 74929 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCG 74988 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| ||||||||||||| |||||| | | | ||| ||| ||| |||||||||||| Sbjct 74989 TTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATACCCGTGTCGGGGTGCAC 75047 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 75048 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 75083 >seq4784 Length=17980 Score = 127 bits (140), Expect = 2e-23 Identities = 254/370 (69%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 1573873 ACATGCCCAACCTCTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGT 1573932 ||||| | || ||| | || | || || || || || || || || |||||||| || Sbjct 15650 ACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATTTTGT 15591 Query 1573933 GTCTGGCGCGTGTCCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCAACGC 1573990 |||||||||| | || | || || | || ||| | |||| ||||| || ||||| || Sbjct 15590 GTCTGGCGCGCGAGCTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCAATGC 15533 Query 1573991 GTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAG 1574050 ||| || || ||||| ||||| || |||| | |||||| ||| ||| Sbjct 15532 GTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGCAGAA 15473 Query 1574051 GATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCA 1574109 | | ||| || || || |||||||||||| | |||| | ||||||||||||| | | Sbjct 15472 GGT-GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACTCAATGA 15414 Query 1574110 CGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCT 1574169 | | || ||||||||||| || || || ||||| | | | |||||||| | Sbjct 15413 CAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGACGCGAT 15354 Query 1574170 TTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCA 1574229 | || |||| ||||||| || | | | |||| ||| || | || ||||||||||||| Sbjct 15353 TCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCTGCGCCA 15294 Query 1574230 TTCTGCGCTT 1574239 | ||||| || Sbjct 15293 TCCTGCGTTT 15284 >seq288 Length=23015 Score = 122 bits (134), Expect = 1e-21 Identities = 287/431 (67%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119 ||||||||| |||||| | || | || || ||||| |||||||||||| | ||| Sbjct 3224 CATGAGCACCTTCGGCCGCTTCTTCCGCGTGACGACCTTCGGCGAGTCGCACTGCAAGGG 3283 Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| ||||||||| | || ||||| || |||| | | || | ||||| |||||||| Sbjct 3284 CGTGGGCTGCATCGTGGATGGCGTTCCCCCGTCGCTCGCTTTGACAGAGGCTGACATCCA 3343 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| | || || || || |||||| || || | || |||||| ||||| Sbjct 3344 GCCGCAGCTCACGCGCCGTCGCCCCGGCCAGAGCAAGCTCACGACCCCGCGCGACGAGAA 3403 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || || | ||| | ||||| ||||| ||| ||||||| ||| |||| | | Sbjct 3404 GGACATGGTGACTATCATGAGCGGCACTGAGAAGGGCTTCACGCTTGGCACGCCGCTTGC 3463 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 ||||| ||| ||||| || ||| || || || || ||| ||||| Sbjct 3464 ACTCTTCGTGCCCAACGAAAACGTGCGCCCTAAGGATTACAAGGAGATGGATCTTGTGCC 3523 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG-G 18418 || || ||||| |||||||| ||| | |||||||||| | | | | | | Sbjct 3524 TCGCCCGGGCCACGCAGACTACACGTACCAGATGAAGTACGGCA-CGCGCGCTAGCAGCG 3582 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 |||| ||||| | ||| ||||| ||| | || || || || ||||| || |||| Sbjct 3583 GCGGTGGCCGTGCCAGTGCTCGCGAAACCATTGGCCGTGTAGCAGCTGGCGCTGTGGCCG 3642 Query 18479 AGAAATGGCTC 18489 |||| |||||| Sbjct 3643 AGAAGTGGCTC 3653 Score = 105 bits (116), Expect = 8e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| ||| | || || || ||||| || || |||||||| Sbjct 4089 GTCACGTGTGTGATCCGCAACGCGCCCGTGGGTCTGGGTGAGCCATGTTTCGACAAGATG 4148 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| || || ||||||||| |||| ||||||||||||||||| |||||||| ||| Sbjct 4149 CAGGCCGTCCTTGCACACGCCATGATGTCCATCCCGGCCACCAAGGGCTTCGAGATCGGC 4208 Query 19185 AGCGGGTT 19192 ||| || Sbjct 4209 TCCGGTTT 4216 >seq3266 Length=101865 Score = 116 bits (128), Expect = 5e-20 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || ||||| || ||||||||||| || || | ||| Sbjct 26315 GCCAGCTCACCGGGGAGCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTG 26374 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | ||||||| |||| |||||| Sbjct 26375 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCG 26434 Query 1254468 TTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| || |||||||||| |||||| | || ||| ||| ||| |||||||||||| Sbjct 26435 TTGATGAAGGAGTTCATGATCGACATTCCACGC-TTGCTGATACCCGTGTCGGGGTGCAC 26493 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 26494 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 26529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106587397071508