Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4771 131 2e-25 seq4119 89.7 5e-13 seq2928 82.4 7e-11 >seq4771 Length=9300 Score = 131 bits (144), Expect = 2e-25 Identities = 358/540 (66%), Gaps = 35/540 (6%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || |||||||| |||| | || | || ||||| ||||| || ||||| ||| Sbjct 4488 TCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTAC 4429 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| ||||||| | || |||||||| ||||| ||||||||||||| || Sbjct 4428 ATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCT 4369 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCGT--TCC 138660 ||||||||| || |||| || || || || | ||||| | ||||| ||| || Sbjct 4368 GTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGT---GTTTGATGACGTCATCT 4312 Query 138661 TTGAGCGACGACCAGTCCCACAAATC-GCT--AGGTTTTTTGTTCCACATATCGTACTGT 138717 || || | | ||||| ||| | | | | |||| | | |||||| ||| |||| Sbjct 4311 TTTAGTGCGGCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGG 4252 Query 138718 AACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCC 138777 || || ||| ||| || ||| ||| | | ||| ||||| ||| || || || Sbjct 4251 AAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCA 4192 Query 138778 AACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837 | ||| | || ||| | ||| || |||| || || ||| || || | ||| | Sbjct 4191 ATCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCG--AAGATG-TTCTTGTTC 4135 Query 138838 AAT---CGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAACGCGTCG 138888 ||| || || | | ||||||| ||| |||| ||| ||||||| || Sbjct 4134 AATTCACGAGCTTGTGGGCTCTCGAACGCGTAGTTCATGAGGA------TGAACGCATCC 4081 Query 138889 GCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG--- 138945 ||||| || || ||||| | || | || |||||||||| || ||| ||||| Sbjct 4080 GCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGAC----TTGCGAGC 4025 Query 138946 -GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 || | | |||||||||||| || ||||||| ||||| | || ||| || |||||| Sbjct 4024 CTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTT 3965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 243/374 (65%), Gaps = 3/374 (1%) Strand=Plus/Minus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| || || ||||| |||||||| || |||| ||||| || | | ||| || || Sbjct 3492 AGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGC 3433 Query 139552 TTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || || || || || || | || | | | || || || |||||||| || Sbjct 3432 TTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGATA 3373 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | ||| | | | ||||| |||| |||||| ||||| || |||| || || Sbjct 3372 ATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGC 3313 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCG 139728 | | |||| ||||| ||||| | |||| || || | |||| | || || ||| Sbjct 3312 ATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCG 3253 Query 139729 TATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGT 139788 || || || || ||| |||||||| | | || ||||| || || | || || Sbjct 3252 TAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGA 3193 Query 139789 AGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATC 139848 || ||||||||| || |||||||| | ||||||||||| | | | |||||| Sbjct 3192 CGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATG 3133 Query 139849 AATTCGTACGTTTC 139862 | |||||||| || Sbjct 3132 AGCTCGTACGTCTC 3119 >seq4119 Length=9781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| ||||| ||||| || || || || || || ||||||||||| Sbjct 9781 GTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTC 9722 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||||||||| | | || || || ||||| || ||||| || Sbjct 9721 GCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCT 9662 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| ||||| |||| |||| || || Sbjct 9661 ACTCTTCACCTGGTGCTGCGTCTGCGTGGCGG 9630 >seq2928 Length=26498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | | Sbjct 7466 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 7407 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 7406 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 7347 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 7346 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 7312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449859786106720